View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_32 (Length: 201)
Name: NF19277_low_32
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_32 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 1725625 - 1725435
Alignment:
| Q |
9 |
cagagagtatcaatatcgatcaatttaaaatagcagttatatagagagtatcaagtnnnnnnnnnnnntatactaagacttaagttcaactagagagtat |
108 |
Q |
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| T |
1725625 |
cagagagtatcaatatcgatcaatttaaaatagcagttatatagagagtatcaagtaaaaaaaaaa--tatactaagacttaagttcaaatagagagtat |
1725528 |
T |
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| Q |
109 |
caatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataatt |
201 |
Q |
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| T |
1725527 |
caatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatcataatt |
1725435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 1739898 - 1739790
Alignment:
| Q |
93 |
ttcaactagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatga |
192 |
Q |
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||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| || ||||| |||||||||||| | || |
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| T |
1739898 |
ttcaactagagagtagcaatcaaatcaacagcaacattgacatgaaaacaaaatataaaaattgaatttaaagcctaagtgataaatcaagcccagacga |
1739799 |
T |
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| Q |
193 |
atcataatt |
201 |
Q |
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||||||||| |
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| T |
1739798 |
atcataatt |
1739790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 96 - 201
Target Start/End: Complemental strand, 1745235 - 1745130
Alignment:
| Q |
96 |
aactagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaaactaaatttaaagtcttagtgacaaatcaagcccacatgaatc |
195 |
Q |
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|||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||| || ||||| |||||||||||| | ||||| |
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| T |
1745235 |
aactagagagtagcaatcaaattaacagcaacattgccatgaaaacaaaatataaaaactgaatttaaagcctaagtgataaatcaagcccagacgaatc |
1745136 |
T |
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| Q |
196 |
ataatt |
201 |
Q |
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|||||| |
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| T |
1745135 |
ataatt |
1745130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 1715374 - 1715448
Alignment:
| Q |
78 |
atactaagacttaagttcaactagagagtatcaatcaaatcagcagcaacattgacatgaaaacaaaatataaaa |
152 |
Q |
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|||| ||||| ||||||| ||||||||||| ||||||||| | || |||||||||||| ||||||||||||||| |
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| T |
1715374 |
ataccaagacataagttccactagagagtaacaatcaaattaacaataacattgacatggaaacaaaatataaaa |
1715448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 1763993 - 1763953
Alignment:
| Q |
125 |
aacattgacatgaaaacaaaatataaaaactaaatttaaag |
165 |
Q |
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||||| |||||| |||||||||||||||||| ||||||||| |
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| T |
1763993 |
aacatcgacatggaaacaaaatataaaaactgaatttaaag |
1763953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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