View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_5 (Length: 382)
Name: NF19277_low_5
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_5 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 18892520 - 18892139
Alignment:
| Q |
1 |
cctcaaatcctccaaatcacatcaaattttctttcctaattgctattaagaaaccatactcatttgtcacaaggtctacagtacaacctattcttcatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
18892520 |
cctcaaatcctccaaatcacatcaaattttctttcctaattgttattaagaaaccatactcatttgtcacatggtctactgtacaacctattcttcatac |
18892421 |
T |
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| Q |
101 |
caatgcaatttctattgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaatcgaaaaatcctaatgaa |
200 |
Q |
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| T |
18892420 |
caatgcaatttctattgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaattgaaaaatcctaatgaa |
18892321 |
T |
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| Q |
201 |
gggattacatatgcgcacatgtgtaattgaaagtgggagttggagtataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatctac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18892320 |
gggattacatatgcgcacatgtgtaattgaaagtgggagttggaatataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatctac |
18892221 |
T |
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| Q |
301 |
atatacgtaccacgaaaagttcaatagaaaagattgaaattttaatcgatgggcaagttgcatttaaataagaaagtgagaa |
382 |
Q |
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| T |
18892220 |
atatacgtaccacgaaaaattcaatagaaaagattgaaattttaatcgatgggcaagctgcatttaaataagaaagtgagaa |
18892139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 49264424 - 49264043
Alignment:
| Q |
1 |
cctcaaatcctccaaa-tcacatcaaattttctttcctaattgctattaagaaaccatactcatttgtcacaaggtctacagtacaacctattcttcata |
99 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
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| T |
49264424 |
cctcaaatcctcaaaaatcacatcaaattttctttcctaattgttattaagaaaccatactcatttgtcacatggtctactgtacaacctattcttcata |
49264325 |
T |
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| Q |
100 |
ccaatgcaatttctattgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaatcgaaaaatcctaatga |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
49264324 |
ccaatgcaatttctattgccttttatttagcaaacaaaccaagaaaagtgcatgtattccattaaagacagaaaacaaagaaattgaaaaatcctaatga |
49264225 |
T |
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| Q |
200 |
agggattacatatgcgcacatgtgtaattgaaagtgggagttggagtataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatcta |
299 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49264224 |
agggattacatatgcgcacaactgtaattgaaagtgggagttggagtataattttcatgaagggattacatgatggcaaaaacccaacaccagtaatcta |
49264125 |
T |
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| Q |
300 |
catatacgtaccacgaaaagttcaatagaaaagattgaaattttaatcgatgggcaagttgcatttaaataagaaagtgagaa |
382 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
49264124 |
catatacgtaccacgaaaaattcaatagaaaagattgaaattttaatcgatggg-aagttgcatttaaataagaaaatgagaa |
49264043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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