View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_6 (Length: 364)
Name: NF19277_low_6
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 146; Significance: 8e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 156 - 349
Target Start/End: Original strand, 32490324 - 32490517
Alignment:
| Q |
156 |
accaaaaacttctttgttccatattctcagtctgtctttcaaagttttcaacttactattgagactaaatgggacaacttgttacatttttgttccaaca |
255 |
Q |
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| T |
32490324 |
accaaaaacttccttattccatattctcagtcagtctttcaaagttttcaacttaccattaagaataaatgggataactagttacatttgtgttccaaca |
32490423 |
T |
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| Q |
256 |
agatctcactatttccttgcagtcaaaatgaagtgcccccatcagttgaaatttaaattgtgaagcaaaaattgttgaagtaacttgaaattcc |
349 |
Q |
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| T |
32490424 |
agatctcactatttccttgcagtcaaaatgaagtgcccacatcagttgaaatttgaattgtgaagcaaaaaatgttgaagtaacttgaaattcc |
32490517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32490288 - 32490321
Alignment:
| Q |
1 |
tgggattacttcttctacaagtaattattcttgc |
34 |
Q |
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| T |
32490288 |
tgggattacctcttctacaagtaattattcttgc |
32490321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Original strand, 17630621 - 17630702
Alignment:
| Q |
2 |
gggattacttcttctacaagtaattattcttgcaaatcaaagatagtacaaaataaagttgtataataattaacaatgtgat |
83 |
Q |
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| T |
17630621 |
gggattacttcgtctacaagtaactggtcctgcaaaacaaagttagtacaaaataaagacttataataattaacaatatgat |
17630702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 32019666 - 32019585
Alignment:
| Q |
2 |
gggattacttcttctacaagtaattattcttgcaaatcaaagatagtacaaaataaagttgtataataattaacaatgtgat |
83 |
Q |
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| T |
32019666 |
gggattacttcgtctacaagtaactggtcctgcaaaacaaagttagtacaaaataaagacttataataattaacaatatgat |
32019585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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