View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19277_low_9 (Length: 331)
Name: NF19277_low_9
Description: NF19277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19277_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 34230717 - 34231022
Alignment:
| Q |
18 |
gtatcaatgtacctacatacaaaaagtaacaaatagttcctcaaatagaagtactccacaaatagatagatatctctaaaaggatgtgattcctagcaag |
117 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230717 |
gtatcaatctacctacatacaaaaagtaacaaatagttcctcaaatagaagtactccacaaatagatagatatctctaaaaggatgtgattcctagcaag |
34230816 |
T |
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| Q |
118 |
agtcttcctgaataacactacaaaattcttctttaagcatcataacctttcaagttttataaggttaaaggatc--accccattgacttaaaaactataa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |
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| T |
34230817 |
agtcttcctgaataacactacaaaattcttctttaagcatcataacctttcaagttttataaggctaaaggatctgcacccattgacttaaaaactataa |
34230916 |
T |
|
| Q |
216 |
gagctgctaaaagaacatattctacaagagatatctagtccccacccgagatatgtagaaaaccagtgnnnnnnnnnnnngttggacaatcttcaagctg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34230917 |
gagctgctaaaagaacatattctacaagagatatctagtccccacccgagatatgtagaaaaccagtgaaaaaataaaaagttggacaatcttcaagctg |
34231016 |
T |
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| Q |
316 |
tctctg |
321 |
Q |
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|||||| |
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| T |
34231017 |
tctctg |
34231022 |
T |
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