View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19278_high_4 (Length: 389)
Name: NF19278_high_4
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_high_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 236 - 373
Target Start/End: Complemental strand, 9059959 - 9059819
Alignment:
| Q |
236 |
cctaaaaattattaataggagaagatggaaaattaatgcagaattttacatgcaatt-aagcaagattcttctacata--actgattgcaaatttacttt |
332 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
9059959 |
cctaaaaattattaataggggaagatggaaaattaatgcagaattttacatgcaattgaagcaagattcttctacatataactgattacaaatttacttt |
9059860 |
T |
|
| Q |
333 |
cttgggtgaagctgacttttcattttgctcagtgggtttgt |
373 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9059859 |
cttgggtgaagctgacttttcattttgctcagtgggtttgt |
9059819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 154
Target Start/End: Complemental strand, 9060172 - 9060041
Alignment:
| Q |
26 |
gtataatttctttttaagagtaattttaatatcttc---ggtcatccttcttaacattaatttcttgaacaagctaagattatgtaagcttgtgaaattg |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9060172 |
gtataatttctttttaagagtaattttaatatcttcttcgatcatccttcttaacattaatttcttgaataagctaagattatgtaagcttgtgaaattg |
9060073 |
T |
|
| Q |
123 |
ttgaaaggatatcaagtccaatgttgtatgga |
154 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
9060072 |
ttgaaaggatatcaagtccaatgttgtatgga |
9060041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 44657894 - 44657955
Alignment:
| Q |
246 |
attaataggagaagatggaaaattaatgcagaattttacatgcaatt-aagcaagattcttc |
306 |
Q |
| |
|
||||||||| ||||||| |||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
44657894 |
attaataggggaagatgtaaaattaatgcataactttacatgcaattgaagcaagattcttc |
44657955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 245 - 292
Target Start/End: Original strand, 45526372 - 45526419
Alignment:
| Q |
245 |
tattaataggagaagatggaaaattaatgcagaattttacatgcaatt |
292 |
Q |
| |
|
|||||||||| ||||||| |||||||||||| || ||||||||||||| |
|
|
| T |
45526372 |
tattaataggggaagatgtaaaattaatgcataagtttacatgcaatt |
45526419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 49251056 - 49251117
Alignment:
| Q |
246 |
attaataggagaagatggaaaattaatgcagaattttacatgcaatt-aagcaagattcttc |
306 |
Q |
| |
|
||||||||| | ||||| |||||||||||| || ||||||||||||| |||||||||||||| |
|
|
| T |
49251056 |
attaatagggggagatgtaaaattaatgcataactttacatgcaattgaagcaagattcttc |
49251117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University