View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_high_7 (Length: 291)
Name: NF19278_high_7
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 273
Target Start/End: Complemental strand, 14140115 - 14139863
Alignment:
| Q |
20 |
aagacaaaaataaaatttaatactaatgaaaagaaaactatttgaagtaatttggcaacagaaacatgcaggtggagtggaatggattcccaattaatac |
119 |
Q |
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| T |
14140115 |
aagacaaaaataaaattta-tactaatgaaaagaaagccatttgaagtaatttgccagccaaaacatgcaggtggagtggaatggattcccaattaatac |
14140017 |
T |
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| Q |
120 |
tctcatctgtgcactcaacctatnnnnnnncttaattaagaacacagtaaactagattatacaactgtcaagtactgtgcatgtggaacactaaagagaa |
219 |
Q |
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| T |
14140016 |
tctcatctgtgcactcaacctataaacaaacttaattaagaacacagtaaactagattatacaactgtcaagtactgtgcatgtggaacactaaagaaaa |
14139917 |
T |
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| Q |
220 |
aatgtctaaaatactattaataggcctgccagcagttgcatgctaaagcctaca |
273 |
Q |
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| T |
14139916 |
aatgtctaaaatactattaataggcctgccagcagttgcatgctaaagcctaca |
14139863 |
T |
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