View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_low_11 (Length: 246)
Name: NF19278_low_11
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 43237055 - 43236826
Alignment:
| Q |
1 |
aggggtagcctttgatccaacattcctccgtgaagaaaagcaacgtcaatttcacggtgcgatggtcctaagaccagttggaatatcaaaaggatcaaaa |
100 |
Q |
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| T |
43237055 |
aggggtagc-tttgatccaacattcctccgtgaagaaaagcaacgtcaatttcacggtgcgatggtcctaagaccagttggaatatcaaaaggattaaaa |
43236957 |
T |
|
| Q |
101 |
tggacccctttgttgctggaatgctaatgtccactttggactcccaaaccgttcgcataggaggctttacgtgaaaacttccaaatatt-gatggaggac |
199 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
43236956 |
tggacccctttgttgccggaatgctaatgtccactttggacccccaaaccgttcgcataggaggctttacgtgaaaacttcaaaatattggatggaggac |
43236857 |
T |
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| Q |
200 |
aacaggctggaaagatgattctcattgttgg |
230 |
Q |
| |
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|||| |||||||| ||||||||||||||||| |
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| T |
43236856 |
aacaagctggaaaaatgattctcattgttgg |
43236826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 111 - 220
Target Start/End: Original strand, 31950127 - 31950237
Alignment:
| Q |
111 |
tgttgctggaatgctaatgtccactttggactcccaaaccgttcgcataggaggctttacgtgaaaacttccaaatatt-gatggaggacaacaggctgg |
209 |
Q |
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|||||| ||||| ||||||||||||||||||||| ||||| ||| ||||||||||||| | |||||||||||||||||| |||||||||||||| | ||| |
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| T |
31950127 |
tgttgccggaatactaatgtccactttggactcctaaaccattcacataggaggctttccatgaaaacttccaaatattggatggaggacaacatgttgg |
31950226 |
T |
|
| Q |
210 |
aaagatgattc |
220 |
Q |
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||||||||||| |
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| T |
31950227 |
aaagatgattc |
31950237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 109 - 230
Target Start/End: Complemental strand, 31952468 - 31952346
Alignment:
| Q |
109 |
tttgttgctggaatgctaatgtccactttggactcccaaaccgttcgcataggaggctttacgtgaaaacttccaaatatt-gatggaggacaacaggct |
207 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||| || | ||| ||| ||| | |||||||||||||||||| |||||| ||||||| ||| |
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| T |
31952468 |
tttgttgccggaatactaatgtccactttggactcccaaaccatttgaatatcaggatttccatgaaaacttccaaatattggatggatgacaacatgct |
31952369 |
T |
|
| Q |
208 |
ggaaagatgattctcattgttgg |
230 |
Q |
| |
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|| |||||||||| ||| ||||| |
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| T |
31952368 |
gggaagatgattcccatcgttgg |
31952346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 230
Target Start/End: Original strand, 3497669 - 3497789
Alignment:
| Q |
111 |
tgttgctggaatgctaatgtccactttggactcccaaaccgttcgcataggaggctttacgtgaaaacttccaaatatt-gatggaggacaacaggctgg |
209 |
Q |
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||||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||| | | | ||||||||||||| ||| |||||||||||||||| |
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| T |
3497669 |
tgttgctggtatactaatgtccactttggactcccaaaccgtacgcataggaggatttccatccatacttccaaatattggattgaggacaacaggctgg |
3497768 |
T |
|
| Q |
210 |
aaagatgattctcattgttgg |
230 |
Q |
| |
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||||||||||| ||| ||||| |
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|
| T |
3497769 |
aaagatgattcccatcgttgg |
3497789 |
T |
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Back To:
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