View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_low_14 (Length: 227)
Name: NF19278_low_14
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 18 - 214
Target Start/End: Complemental strand, 8029115 - 8028919
Alignment:
| Q |
18 |
atcattcccttgaagatcattcatgaagacttggtattctggagactcgtgattatgttcttggcaaagtttctttactaatttgataacttcagatatc |
117 |
Q |
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| T |
8029115 |
atcattcccttgaagatcattcatgaagacttggtattctggagactcgtgattatgttcttggcaaagtttatcaactaatttgataacttcagatatc |
8029016 |
T |
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| Q |
118 |
acaaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcatctc |
214 |
Q |
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| T |
8029015 |
accaacaaagtgtttggcccagaagaacaacccaaatctgcaatacctagcctttttgggaacgttttgcagtagaggttctttatggcttcatctc |
8028919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 7298122 - 7298171
Alignment:
| Q |
112 |
gatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
161 |
Q |
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| T |
7298122 |
gataccacaaacaaagtgtttggtccagaagaacaacctaaatctgcaat |
7298171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 32709889 - 32709950
Alignment:
| Q |
100 |
ttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
161 |
Q |
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| T |
32709889 |
ttgataaattctgataccaccaacaaagtgtttggcccagaagagcaacccaagtctgcaat |
32709950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 161
Target Start/End: Original strand, 32704200 - 32704240
Alignment:
| Q |
121 |
aacaaagtgtttggcccagaagaacaacccaaatctgcaat |
161 |
Q |
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| T |
32704200 |
aacaaagtgtttggtccataagagcaacccaaatctgcaat |
32704240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 27736914 - 27736976
Alignment:
| Q |
99 |
tttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
161 |
Q |
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|||||||| ||| |||||||| |||| ||||||||||||| |||| |||||||| |||||||| |
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| T |
27736914 |
tttgataatttctgatatcaccaacatagtgtttggcccaaaagagcaacccaagtctgcaat |
27736976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 100 - 161
Target Start/End: Original strand, 5811596 - 5811657
Alignment:
| Q |
100 |
ttgataacttcagatatcacaaacaaagtgtttggcccagaagaacaacccaaatctgcaat |
161 |
Q |
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||||||| |||||| ||||| || ||||||||||| ||| |||| |||||||| |||||||| |
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| T |
5811596 |
ttgataatttcagagatcaccaagaaagtgtttggtccaaaagagcaacccaagtctgcaat |
5811657 |
T |
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