View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_low_15 (Length: 208)
Name: NF19278_low_15
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 72; Significance: 6e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 120 - 191
Target Start/End: Original strand, 4408521 - 4408592
Alignment:
| Q |
120 |
attctcatcaagatattttatgagttaaaatggttaatccatttcaaaggactattttgggattttcatatt |
191 |
Q |
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| T |
4408521 |
attctcatcaagatattttatgagttaaaatggttaatccatttcaaaggactattttgggattttcatatt |
4408592 |
T |
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Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 4408294 - 4408353
Alignment:
| Q |
34 |
atataattagttctttaataactgtaaaaactatattttaccttaatataagaacgattc |
93 |
Q |
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| T |
4408294 |
atataattagttctttaataaccgtaaaaactatattttaccttaatataagaacgattc |
4408353 |
T |
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