View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_low_2 (Length: 548)
Name: NF19278_low_2
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 4191545 - 4192064
Alignment:
| Q |
19 |
gaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191545 |
gaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttct |
4191644 |
T |
|
| Q |
119 |
caggttttatgatttgggaaaaagacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191645 |
caggttttatgatttgggaaaaagacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatt |
4191744 |
T |
|
| Q |
219 |
tatgttggggacactcaagaggtatgtttctactcaatgtttctctatgnnnnnnnaatatttgagttaggcattctaactgtgactttccgttgtgatt |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191745 |
tatgttggggacactcaagaggtatgtttctactcaatgtttctctatgtttttttaatatttgagttaggcattctaactgtgactttccgttgtgatt |
4191844 |
T |
|
| Q |
319 |
tctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtcattggccagagtgttaatatttgaattttaactaaacttgttt |
418 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191845 |
tctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtccttggccagagtgttaatatttgaattttaactaaacttgttt |
4191944 |
T |
|
| Q |
419 |
ttattagagctccagaagggattgttctatatttcaaaacatgaccaaggctctgaaacaaaactttcttaattttagacagcatgcttattcgcatatt |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191945 |
ttattagagctccagaagggattgttctatatttcaaaacatgactaaggctctgaaacaaaactttcttaattttagacagcatgcttattcgcatatt |
4192044 |
T |
|
| Q |
519 |
cattgtactgctgctctctg |
538 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4192045 |
cattgtactgctgctctctg |
4192064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 19 - 538
Target Start/End: Original strand, 52211104 - 52211623
Alignment:
| Q |
19 |
gaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttct |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211104 |
gaagttctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttct |
52211203 |
T |
|
| Q |
119 |
caggttttatgatttgggaaaaagacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatt |
218 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211204 |
caggttttatgatttgggaaaaagacggttattaaggaagtgtgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatt |
52211303 |
T |
|
| Q |
219 |
tatgttggggacactcaagaggtatgtttctactcaatgtttctctatgnnnnnnnaatatttgagttaggcattctaactgtgactttccgttgtgatt |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211304 |
tatgttggggacattcaagaggtatgtttctactcaatgtttgtctatgtttttttaatatttgagttaggcattctaactgtgactttccgttgtgatt |
52211403 |
T |
|
| Q |
319 |
tctggtattttctcttcgcatctgatattgcattagcttctgagattataactcgtcattggccagagtgttaatatttgaattttaactaaacttgttt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
52211404 |
tctggtattttctcttcgcatctgatattgcattagcttctgatattataactcgtctttggccagagtgttaatatttgaattttaactaaacttgttt |
52211503 |
T |
|
| Q |
419 |
ttattagagctccagaagggattgttctatatttcaaaacatgaccaaggctctgaaacaaaactttcttaattttagacagcatgcttattcgcatatt |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52211504 |
ttattagagctccagaagggattgttctatatttcaaaacatgactaaggctctgaaacaaaactttcttaattttagacagcatgcttattcgcatatt |
52211603 |
T |
|
| Q |
519 |
cattgtactgctgctctctg |
538 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
52211604 |
cattgtactgctgctctctg |
52211623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 47857879 - 47858110
Alignment:
| Q |
19 |
gaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttct |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || |
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|
| T |
47857879 |
gaaggtctcttgaacttcttcacaaaactcaggttgagggtgttcctcttgctctatgtcagtttcaaggaagattacttgcaggaataggacctgtgct |
47857978 |
T |
|
| Q |
119 |
caggttttatgatttgggaaaaagacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatt |
218 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||| || | |||||||||| ||| |||| | |||||||||||||| ||||||||||||||||| |
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| T |
47857979 |
caggctatatgatttgggaaaaagacgattattaagaaaatgtgagaataagtcatttcccatttcgattgtctctattcatgcctaccgtgatcgaatt |
47858078 |
T |
|
| Q |
219 |
tatgttggggacactcaagaggtatgtttcta |
250 |
Q |
| |
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||||| || |||| ||||||||||||||||| |
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| T |
47858079 |
tatgtaggtgacatccaagaggtatgtttcta |
47858110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 47716204 - 47715973
Alignment:
| Q |
19 |
gaaggtctcttgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttct |
118 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||| || |
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| T |
47716204 |
gaaggtctcttgaacttctccacaaaactcaggttgagggtgttcctctcgctctatgtcagtttcaaggaagattacttgcaggaattggacctgtact |
47716105 |
T |
|
| Q |
119 |
caggttttatgatttgggaaaaagacggttattaaggaagtatgagaataagctattccccaacacaattgtctctattcaaacctaccgtgatcgaatt |
218 |
Q |
| |
|
|||| | |||||||||||||||||||| |||||||| || | |||||||||| |||||||| | | |||||||||||||| ||||||||||||||||| |
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|
| T |
47716104 |
caggctatatgatttgggaaaaagacgattattaagaaaatgtgagaataagtcattccccagctccattgtctctattcatgcctaccgtgatcgaatt |
47716005 |
T |
|
| Q |
219 |
tatgttggggacactcaagaggtatgtttcta |
250 |
Q |
| |
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||||| || | || ||||||||||||||||| |
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|
| T |
47716004 |
tatgtaggtggcatccaagaggtatgtttcta |
47715973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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