View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19278_low_3 (Length: 527)
Name: NF19278_low_3
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_3 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0014 (1 HSPs) |
| | |
|
| [»] scaffold0975 (1 HSPs) |
| | |
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| [»] scaffold0003 (1 HSPs) |
| | |
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| [»] scaffold0064 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 6 - 527
Target Start/End: Complemental strand, 40771415 - 40770894
Alignment:
| Q |
6 |
aggatcagagatggaatataaagagaaatattatgtaaaggggaaattattatttattaaaagtggtaataaaaaatcaatttgaaagcgtagcgaaaga |
105 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40771415 |
aggatctgaaatggaatataaagagaaaaattatgtaaaggggaaattattatttattaaaagtggtaataaaatatcaatttgaaagcgtagcgaaaga |
40771316 |
T |
|
| Q |
106 |
gagtaaatttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40771315 |
gagtaaatttaccaatttcgaactgattggataattgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacgt |
40771216 |
T |
|
| Q |
206 |
ggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattat |
305 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
40771215 |
ggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaaaattat |
40771116 |
T |
|
| Q |
306 |
taaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatctatcaaggt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
40771115 |
aaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcacatatccatctatcaaggt |
40771016 |
T |
|
| Q |
406 |
caattcatcttgaagttcatcataaaggtcaacaataattaggggatctagttcacaaataatctgtgatataattaaaacaatgttagtctaatgacat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40771015 |
caattcatcttgaagttcatcataaaggtcagcaataattaggggatctagttcacaaataatctgtgatataattaaaacaatgttagtctaatgacat |
40770916 |
T |
|
| Q |
506 |
gaaaaaattgtgcaaatattgt |
527 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40770915 |
gaaaaaattgtgcaaatattgt |
40770894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 20217218 - 20217366
Alignment:
| Q |
182 |
gaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagaca |
281 |
Q |
| |
|
|||||||| |||||||| || | ||||||||| || |||| ||||||||| |||| |||| | |||| || |||||||| |||||||| |||||||||| |
|
|
| T |
20217218 |
gaagtagttaatctatgctaccttggatattcaatttttgttgtagaaccactgaaaattttgatttgaaaaacactattacctaaatacgtgtaagaca |
20217317 |
T |
|
| Q |
282 |
taagtgggtttgatgtaatattattaaaatttctgaattcgtgccaacc |
330 |
Q |
| |
|
||||||| |||| ||| ||||||| ||||| | ||||||||||||||| |
|
|
| T |
20217318 |
taagtggatttgttgttatattatagaaattacggaattcgtgccaacc |
20217366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 183 - 330
Target Start/End: Original strand, 19287537 - 19287684
Alignment:
| Q |
183 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
282 |
Q |
| |
|
||||||||||| |||| |||| ||||||||| ||| ||| |||||||||| |||||||| | |||| ||| ||||| |||||||||||| ||||||| |
|
|
| T |
19287537 |
aagtagtcaatatatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcacctaaatatgtgaaagacat |
19287636 |
T |
|
| Q |
283 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaacc |
330 |
Q |
| |
|
|||||| || ||| |||| || ||||| ||| ||||| |||||||| |
|
|
| T |
19287637 |
aagtggattcattgtgatatgataaaaatctctaaattcatgccaacc |
19287684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 288
Target Start/End: Complemental strand, 27621517 - 27621414
Alignment:
| Q |
185 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
284 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| |||| ||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
27621517 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataa |
27621418 |
T |
|
| Q |
285 |
gtgg |
288 |
Q |
| |
|
|||| |
|
|
| T |
27621417 |
gtgg |
27621414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 6 - 527
Target Start/End: Original strand, 8331664 - 8332185
Alignment:
| Q |
6 |
aggatcagagatggaatataaagagaaatattatgtaaaggggaaattattatttattaaaagtggtaataaaaaatcaatttgaaagcgtagcgaaaga |
105 |
Q |
| |
|
|||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
8331664 |
aggatctgaaatggaatataaagagaaaaattatgtaaaggggaaattattatttattaaaagtggtaataaaatatcaatttgaaagtgtagcgaaaga |
8331763 |
T |
|
| Q |
106 |
gagtaaatttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacat |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
8331764 |
gagtaaatttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacgt |
8331863 |
T |
|
| Q |
206 |
ggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattat |
305 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8331864 |
ggatattcgtttgttgttgtagaaccattgaatatttgggtttggaatacactatttcctaattatgtgtaagacataagtgggtttgatgtaatattat |
8331963 |
T |
|
| Q |
306 |
taaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatctatcaaggt |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8331964 |
aaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtggtattttgttaaattcaacttcatgactattcacatatccatctatcaaggt |
8332063 |
T |
|
| Q |
406 |
caattcatcttgaagttcatcataaaggtcaacaataattaggggatctagttcacaaataatctgtgatataattaaaacaatgttagtctaatgacat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8332064 |
caattcatcttgaagttcatcataaaggtcagcaataattaggggatctagttcacaaataatctgtgatataattaaaacaatgttagtctaatgacat |
8332163 |
T |
|
| Q |
506 |
gaaaaaattgtgcaaatattgt |
527 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8332164 |
taaaaaattgtgcaaatattgt |
8332185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 160 - 379
Target Start/End: Complemental strand, 17021075 - 17020856
Alignment:
| Q |
160 |
aaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacacta |
259 |
Q |
| |
|
|||||| | |||| ||||| ||||||||| ||||| ||||||| |||||||||||| ||| | |||||| ||||| | || | || ||||| |||| |
|
|
| T |
17021075 |
aaatgttagatctttaagacaggaagtagttaatctgtgataacgtggatattcgttatttggtgcagaaccgttgaagagtttgattatgaatatacta |
17020976 |
T |
|
| Q |
260 |
tttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattt |
359 |
Q |
| |
|
||||||| ||||||||||||||| ||||| |||||||||||||||| |||| | |||| | || |||||| ||| || |||||||| |||| || |
|
|
| T |
17020975 |
tttcctacatatgtgtaagacattagtggatttgatgtaatattataaaaaaatttgaacttgtcccaaccggttgtaaggattggcatgagtatagatt |
17020876 |
T |
|
| Q |
360 |
tgttaaattcaacttcatga |
379 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
17020875 |
tgttaaattcaacttcatga |
17020856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 143 - 334
Target Start/End: Complemental strand, 14573521 - 14573330
Alignment:
| Q |
143 |
tttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatattt |
242 |
Q |
| |
|
|||| ||||| || |||||||||||||||| | ||||||||||||| |||||||||||| | |||||||| | ||||| | ||| | ||||| || | |
|
|
| T |
14573521 |
tttgtcatgttgatttcaaatgtaacatctttgagattggaagtagccaatctatgatagcgtggatatttaatggttgttgcagaccatttgaaaatgt |
14573422 |
T |
|
| Q |
243 |
gggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgt |
334 |
Q |
| |
|
| |||||||||||||||||| ||||||||| || ||||||| ||| || | |||| | || ||| ||| |||| ||||||||||||||| |
|
|
| T |
14573421 |
cgatttggaatacactatttcttaaatatgtttaggacataattggaatttttttaatttgataaaagtttttgaactcgtgccaaccttgt |
14573330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 39319258 - 39319362
Alignment:
| Q |
183 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
282 |
Q |
| |
|
|||||||||||||||| |||| | ||||||| ||| ||| |||||||||| |||||||| | |||| ||| ||||| ||||||||||| ||||||| |
|
|
| T |
39319258 |
aagtagtcaatctatggtaacgtcgatattcattttttggtgtagaaccatcgaatattttgatttgaaatttactatcagctaaatatgtgaaagacat |
39319357 |
T |
|
| Q |
283 |
aagtg |
287 |
Q |
| |
|
||||| |
|
|
| T |
39319358 |
aagtg |
39319362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 160 - 494
Target Start/End: Complemental strand, 19777687 - 19777353
Alignment:
| Q |
160 |
aaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacacta |
259 |
Q |
| |
|
||||||||||||| |||| | ||||||||||||| |||||| | ||||||||| ||||||| ||||| || |||| ||||| |||||||| |||| |
|
|
| T |
19777687 |
aaatgtaacatctttaagtcttgaagtagtcaatcgatgatagcgtggatattcatttgttggtgtagatccggtgaaaatttgaatttggaatgtacta |
19777588 |
T |
|
| Q |
260 |
tttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattt |
359 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||||||| || ||||||||||| |||||| |||| | || ||||||||||||| || |
|
|
| T |
19777587 |
tttcctaaatatgtgtaagacataagtaggtttgatataatattataaacatttctgaattggtgccatccttccctaagcattggcattagtatagatt |
19777488 |
T |
|
| Q |
360 |
tgttaaattcaacttcatgactattcccatatccatctatcaaggtcaattcatcttgaagttcatcataaaggtcaacaataattaggggatctagttc |
459 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||||||||||||||| | | |||||||||||||||||||| ||| ||||||| || ||||||| ||| |
|
|
| T |
19777487 |
tgttaaattcaacttcatgattatttccataaccatctatcaaggtccaatgttcttgaagttcatcataaagttcagcaataataagcggatctaattc |
19777388 |
T |
|
| Q |
460 |
acaaataatctgtgatataattaaaacaatgttag |
494 |
Q |
| |
|
||||| ||||||| ||||| |||| |||||||| |
|
|
| T |
19777387 |
gcaaattatctgtgttataaagaaaataatgttag |
19777353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 233 - 402
Target Start/End: Complemental strand, 19785476 - 19785307
Alignment:
| Q |
233 |
ttgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
332 |
Q |
| |
|
||||| || ||| |||||||||||||||||||||||||||| || ||||||| || ||| | |||| | || ||| ||| |||| ||||||||||||| |
|
|
| T |
19785476 |
ttgaaaatgtggatttggaatacactatttcctaaatatgtttaggacataattgaaattgttttaatttgataaaagtttttgaactcgtgccaacctt |
19785377 |
T |
|
| Q |
333 |
gtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatctatcaa |
402 |
Q |
| |
|
|| | |||||||| ||||| | ||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
19785376 |
gtttcagtattggtattagcataattttgttaaattcaacttcatgactatttccatacccatctatcaa |
19785307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 183 - 380
Target Start/End: Original strand, 20529163 - 20529360
Alignment:
| Q |
183 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
282 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| ||| ||| |||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
20529163 |
aagtagtcaatctatggtaatgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
20529262 |
T |
|
| Q |
283 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac |
380 |
Q |
| |
|
|||||| || |||| |||| || ||||| ||| |||| |||||||| || |||||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
20529263 |
aagtggattcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac |
20529360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 19787714 - 19787661
Alignment:
| Q |
148 |
catgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgata |
201 |
Q |
| |
|
||||| || |||||||||||||||| | ||||||||||||| |||||| ||||| |
|
|
| T |
19787714 |
catgttgatttcaaatgtaacatctttgagattggaagtagccaatctttgata |
19787661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 5e-42; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 114 - 397
Target Start/End: Complemental strand, 33549075 - 33548792
Alignment:
| Q |
114 |
ttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattc |
213 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| ||||||||| || |||||||| | |||| ||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
33549075 |
ttaccaattttgaactaattggatctttgtctggcatgtctacatcaaatgtgagatctttaagacaggaagtagtatgtctatgatatcgtggatattc |
33548976 |
T |
|
| Q |
214 |
gtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaattt |
313 |
Q |
| |
|
||| ||| |||||||||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||||| || |||| || |||| | |
|
|
| T |
33548975 |
attttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaagttatatgataaaaaaat |
33548876 |
T |
|
| Q |
314 |
ctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatct |
397 |
Q |
| |
|
||||||| ||||||||||| || || |||||||| || | | ||||||||||| ||||| ||||||||| ||||| |||||| |
|
|
| T |
33548875 |
ctgaattggtgccaaccttccgtaagcattggcataagcatcaatttgttaaattgaacttgatgactatttccataaccatct |
33548792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 114 - 397
Target Start/End: Complemental strand, 26229574 - 26229292
Alignment:
| Q |
114 |
ttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattc |
213 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| ||||||||| || |||||||| | |||| ||||| ||||||||| ||||||||| | ||||||||| |
|
|
| T |
26229574 |
ttaccaattttgaactaattggatctttgtctggcatgtctacatcaaatgtgagatctttaagacaggaagtagtatgtctatgatatcgtggatattc |
26229475 |
T |
|
| Q |
214 |
gtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaattt |
313 |
Q |
| |
|
||| | || |||||||||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||||| || |||| || |||| | |
|
|
| T |
26229474 |
atttttggt-gtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaagttatatgataaaaaaat |
26229376 |
T |
|
| Q |
314 |
ctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatct |
397 |
Q |
| |
|
||||||| ||||||||||| || || |||||||| || | | ||||||||||| ||||| ||||||||| ||||| |||||| |
|
|
| T |
26229375 |
ctgaattggtgccaaccttccgtaagcattggcataagcatcaatttgttaaattgaacttgatgactatttccataaccatct |
26229292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 26231360 - 26231269
Alignment:
| Q |
16 |
atggaatataaagagaaatattatgtaaaggggaaattattatttattaaaagtggtaataaaaaatcaatttgaaagcgtagcgaaagaga |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26231360 |
atggaatataaagagaaatattacgtaaaggggaaattattatttattagaagtggtaataaaaaatcaatttgaaagcgtagcgaaagaga |
26231269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 33550984 - 33550893
Alignment:
| Q |
16 |
atggaatataaagagaaatattatgtaaaggggaaattattatttattaaaagtggtaataaaaaatcaatttgaaagcgtagcgaaagaga |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33550984 |
atggaatataaagagaaatattacgtaaaggggaaattattatttattagaagtggtaataaaaaatcaatttgaaagcgtagcgaaagaga |
33550893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 380
Target Start/End: Original strand, 4254811 - 4255008
Alignment:
| Q |
183 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||| ||| |||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
4254811 |
aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
4254910 |
T |
|
| Q |
283 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac |
380 |
Q |
| |
|
|||||| || |||| |||| || ||||| ||| |||| |||||||| || |||||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
4254911 |
aagtggattcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac |
4255008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 4684279 - 4684370
Alignment:
| Q |
16 |
atggaatataaagagaaatattatgtaaaggggaaattattatttattaaaagtggtaataaaaaatcaatttgaaagcgtagcgaaagaga |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4684279 |
atggaatataaagagaaatattacgtaaaggggaaattattatttattagaagtggtaataaaaaatcaatttgaaagcgtagcgaaagaga |
4684370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 114 - 397
Target Start/End: Original strand, 23961330 - 23961612
Alignment:
| Q |
114 |
ttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattc |
213 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| ||||||||| || |||||||||| |||| ||||| ||||||||| | ||||||| ||||||||| |
|
|
| T |
23961330 |
ttaccaattttgaactaattggatctttgtctggcatgtctacatcaaatgtaagatctttaagacaggaagtagtatgtttatgatatg-tggatattc |
23961428 |
T |
|
| Q |
214 |
gtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaattt |
313 |
Q |
| |
|
||| ||| |||||||||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||||| | |||| || |||| | |
|
|
| T |
23961429 |
attttttggtgtagaaccattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaaggtatatgataaaaaaat |
23961528 |
T |
|
| Q |
314 |
ctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccatatccatct |
397 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| || | ||||||||| | ||||| ||||||||| ||||| |||||| |
|
|
| T |
23961529 |
ctgaattggtgccaaccttctgtaagtattggcataagcatacatttgttaaactgaacttgatgactatttccataaccatct |
23961612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 114 - 390
Target Start/End: Complemental strand, 134233 - 133957
Alignment:
| Q |
114 |
ttaccaatttcgaactgattggatatttgtttggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattc |
213 |
Q |
| |
|
|||||||||| ||||| ||||||| ||||| ||||||||| || |||||||||| |||| ||||| ||||||||| ||||||||| ||||||||| |
|
|
| T |
134233 |
ttaccaattttgaactaattggatctttgtctggcatgtctacatcaaatgtaagatctttaagacaggaagtagtatgtctatgatattgtggatattc |
134134 |
T |
|
| Q |
214 |
gtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaattt |
313 |
Q |
| |
|
||| ||| |||||| ||||||| |||| | |||||||| |||||| || ||||||||| ||||||||||||| ||||| || |||| || |||| | |
|
|
| T |
134133 |
attttttggtgtagaatcattgaagattttgatttggaatgtactattacccaaatatgtgaaagacataagtggatttgaagttatatgataaaaaaat |
134034 |
T |
|
| Q |
314 |
ctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgactattcccata |
390 |
Q |
| |
|
|||||| ||||||||||| || |||||| |||| || | ||||||||||| ||||| |||| |||| ||||| |
|
|
| T |
134033 |
atgaattggtgccaaccttctggaagtattagcataagcatacatttgttaaattgaacttgatgattatttccata |
133957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 183 - 380
Target Start/End: Original strand, 21897781 - 21897978
Alignment:
| Q |
183 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
282 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||| ||| |||||||||| |||||||| | ||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
21897781 |
aagtagtcaatctatggtaacgtggatattcattttttggtgtagaaccatcgaatattttgatttggaatacactatgacctaaatatgtgaaagacat |
21897880 |
T |
|
| Q |
283 |
aagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtattttgttaaattcaacttcatgac |
380 |
Q |
| |
|
|||||| || |||| |||| || ||||| ||| |||| |||||||| || |||||||| || || ||||||||||||||||||| ||||| |
|
|
| T |
21897881 |
aagtggattcaatgtgatatgataaaaatctctaaattgatgccaaccggtagtaagtattggtatggtgaggattttgttaaattcaacttgatgac |
21897978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 14802874 - 14802978
Alignment:
| Q |
183 |
aagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacat |
282 |
Q |
| |
|
|||||||||| ||||| |||| ||||||||| ||||||| |||||| |||||||||||| ||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
14802874 |
aagtagtcaacctatggtaacttggatattcatttgttggtgtagaagcattgaatatttttatttggaatatgctattacctaaatatgtgaaagacat |
14802973 |
T |
|
| Q |
283 |
aagtg |
287 |
Q |
| |
|
||||| |
|
|
| T |
14802974 |
aagtg |
14802978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0975 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0975
Description:
Target: scaffold0975; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 185 - 332
Target Start/End: Complemental strand, 3663 - 3516
Alignment:
| Q |
185 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
284 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| |||| ||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
3663 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatgtgaaagacataa |
3564 |
T |
|
| Q |
285 |
gtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
332 |
Q |
| |
|
|||| || |||| | || || ||||| ||||||||||||||||||| |
|
|
| T |
3563 |
gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt |
3516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 158 - 379
Target Start/End: Original strand, 118957 - 119178
Alignment:
| Q |
158 |
tcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacac |
257 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||| ||||| ||||||| ||||||||| || ||| | |||||| ||||| | || | || ||||| || |
|
|
| T |
118957 |
tcaaatgtcaaatctttaagacaggaagtagttaatctgtgataacgtggatattcattatttggtgcagaaccgttgaagagtttgattatgaatatac |
119056 |
T |
|
| Q |
258 |
tatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattggcattagtagtat |
357 |
Q |
| |
|
||| ||||| ||||||||||||||| ||||| |||||||||||||||| |||| || |||| | || |||||| ||| || |||||||| | | |
|
|
| T |
119057 |
tatgtcctacatatgtgtaagacattagtggatttgatgtaatattataaaaaattatgaacttgtcccaaccggttgtaaggattggcatgatgataga |
119156 |
T |
|
| Q |
358 |
tttgttaaattcaacttcatga |
379 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
119157 |
tttgttaaattcaacttcatga |
119178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 485
Target Start/End: Original strand, 143594 - 143934
Alignment:
| Q |
145 |
tggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgg |
244 |
Q |
| |
|
|||||| || ||||| ||||||| |||| ||||| |||||||| ||| ||||||| | ||||||||| || ||| |||||||| ||||| | || | |
|
|
| T |
143594 |
tggcatatcaacttcgaatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttg |
143693 |
T |
|
| Q |
245 |
gtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattg |
344 |
Q |
| |
|
| |||||| ||||||||||| |||||| ||||||| ||||| |||||||| ||||||| | |||||||||| | || |||||| | | | ||||| |
|
|
| T |
143694 |
atcaggaatatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaaccccttataattattg |
143793 |
T |
|
| Q |
345 |
gcattagtagtattttgttaaattcaacttcatgactattcccatatccatctatcaaggtcaattcatcttgaagttcatcataaaggtcaacaataat |
444 |
Q |
| |
|
|||| || | |||||||||||||||||||||| ||| | | ||||| || || ||| ||| || | |||||||||| |||| ||| ||||| | |
|
|
| T |
143794 |
gcatgagcatagatttgttaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaaagttcagcaatagt |
143893 |
T |
|
| Q |
445 |
taggggatctagttcacaaataatctgtgatataattaaaa |
485 |
Q |
| |
|
||||| |||| |||||| |||| |||| |||||| ||||| |
|
|
| T |
143894 |
aagggggtctaattcacagataacctgttatataaataaaa |
143934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 145 - 485
Target Start/End: Original strand, 18059301 - 18059641
Alignment:
| Q |
145 |
tggcatgtcgacttcaaatgtaacatctctaagattggaagtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgg |
244 |
Q |
| |
|
|||||| || ||||| ||||||| |||| ||||| |||||||| ||| ||||||| | ||||||||| || ||| |||||||| ||||| | || | |
|
|
| T |
18059301 |
tggcatatcaacttcgaatgtaagatctttaagacatgaagtagttaatgtatgatatcgtggatattcattgtttggtgtagaaccgttgaagagtttg |
18059400 |
T |
|
| Q |
245 |
gtttggaatacactatttcctaaatatgtgtaagacataagtgggtttgatgtaatattattaaaatttctgaattcgtgccaaccttgtgtgagtattg |
344 |
Q |
| |
|
| |||||| ||||||||||| |||||| ||||||| ||||| |||||||| ||||||| | |||||||||| | || |||||| | | | ||||| |
|
|
| T |
18059401 |
atcaggaatatactatttcctacatatgtaaaagacattagtggatttgatgttatattataataatttctgaacttgtcccaaccccctataattattg |
18059500 |
T |
|
| Q |
345 |
gcattagtagtattttgttaaattcaacttcatgactattcccatatccatctatcaaggtcaattcatcttgaagttcatcataaaggtcaacaataat |
444 |
Q |
| |
|
|||| || | |||||||||||||||||||||| ||| | | ||||| || || ||| ||| || | |||||||||| |||| ||| ||||| | |
|
|
| T |
18059501 |
gcatgagcatagatttgttaaattcaacttcatgaacatttgctaaaccatcaattaatgtccattggtcatcaagttcatcaaaaagttcagcaatagt |
18059600 |
T |
|
| Q |
445 |
taggggatctagttcacaaataatctgtgatataattaaaa |
485 |
Q |
| |
|
||||| |||| |||||| |||| |||| |||||| ||||| |
|
|
| T |
18059601 |
aagggggtctaattcacagataacctgttatataaataaaa |
18059641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 332
Target Start/End: Complemental strand, 816 - 669
Alignment:
| Q |
185 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
284 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| | || ||||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
816 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaaatttaatttggaaatgactattatctagatatgtgaaagacataa |
717 |
T |
|
| Q |
285 |
gtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
332 |
Q |
| |
|
|||| || |||| | || || ||||| ||||||||||||||||||| |
|
|
| T |
716 |
gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt |
669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 332
Target Start/End: Complemental strand, 23050824 - 23050677
Alignment:
| Q |
185 |
gtagtcaatctatgataacatggatattcgtttgttgtcgtagaaccattgaatatttgggtttggaatacactatttcctaaatatgtgtaagacataa |
284 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||| ||| ||||||||||||||| |||| ||||||| |||||| ||| |||| || ||||||||| |
|
|
| T |
23050824 |
gtagtcaacctatgataacgtggatattcattttttggcgtagaaccattgaaaattttaatttggaaatgactattatctagatatatgaaagacataa |
23050725 |
T |
|
| Q |
285 |
gtgggtttgatgtaatattattaaaatttctgaattcgtgccaacctt |
332 |
Q |
| |
|
|||| || |||| | || || ||||| ||||||||||||||||||| |
|
|
| T |
23050724 |
gtggattcaatgttacatgataaaaatccctgaattcgtgccaacctt |
23050677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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