View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_low_5 (Length: 373)
Name: NF19278_low_5
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 42778445 - 42778093
Alignment:
| Q |
1 |
tgtgtttgtttgaactttggattcatgcacaacctaatgaaaggaatggtttaaaaagagtgtttgaaccaattaggcctaggcatagatattgcaaata |
100 |
Q |
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| T |
42778445 |
tgtgtttgtttgaactttggattcatgcacaacctaatgaaaggaatggtttaaaaagagtgtttgaaccaattaggcctaggcatagatattgcaaata |
42778346 |
T |
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| Q |
101 |
ggaagtaatgaaattcaaacagatatatcttgctcattagattattaaggtttaaaaatataagatatttgtacttaatggtagaggccattcaataaaa |
200 |
Q |
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| T |
42778345 |
ggaagtaatgaaattcaaacagatatatcttgctcattagattattaaggtttaaaaatataagatatttgtacttaatggtagaggccattcaataaaa |
42778246 |
T |
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| Q |
201 |
tcaaatgatcattcttataaatgaaagaaaaatcaggtaaggtaacataaagaacgacagtaaaccttcaaaataagctagaaatttcctgataatgatt |
300 |
Q |
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| T |
42778245 |
tcaaatgatcattcttataaatgaaagaaaaatcaggtaaggtaacataaagaacgacagtaaaccttcaaaataagctagaaatttcctgataatgatt |
42778146 |
T |
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| Q |
301 |
atgatattaataattgacaaaccactttcagtacatggtaaaatcctaataac |
353 |
Q |
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| T |
42778145 |
atgatattaataattgacaaaccactttcagtacatggtaaaatcctaataac |
42778093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 9358051 - 9357984
Alignment:
| Q |
103 |
aagtaatgaaattcaaacagatatatcttgctcattagattattaaggtttaaaaatataagatattt |
170 |
Q |
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| T |
9358051 |
aagtaatgaaattcaaagagagatatgttgctcattagattattaagttttccaattataagctattt |
9357984 |
T |
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