View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19278_low_6 (Length: 310)
Name: NF19278_low_6
Description: NF19278
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19278_low_6 |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 43237429 - 43237135
Alignment:
| Q |
13 |
aatatgttattcatttgattttgtaatttattagttaaatttgtgttggnnnnnnnnnnnctcctattaaatttttgtattattttgcctctattagatc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
43237429 |
aatatgttattcatttgattttgtaatttattagttaaatttgtgt--ggttttttttttctcctattaaatttttgtattattttgcctctattagatc |
43237332 |
T |
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| Q |
113 |
tacaaccgatgcaacaaaaatcgattggaggactatcatatcaagnnnnnnnnnctcgaacgagtgtaatttcttcgattaaaaccaagaacaaggaaga |
212 |
Q |
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| T |
43237331 |
tacaagcgatgcaacaacaatcgattggaggactatcatatcaagttttattttctcgaacgagtgtaatttctccgattaaaaccaagaacaaggaaga |
43237232 |
T |
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| Q |
213 |
cgacataatttgtgttctttttaatgaaggtnnnnnnnnctatgcaagtatcctcttttcaattttttaatagggtagcctcatttcatattcactat |
310 |
Q |
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| T |
43237231 |
cgacataatttgtattctttttaatgaaggt-aaaaaaactatgcaagtatcctcttttcaattttttaatagggtagcctcatttcatattcactat |
43237135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 8e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 18441664 - 18441963
Alignment:
| Q |
7 |
tcgaagaatatgttattcatttgattttgtaatttattagttaaatttgtgttggnnnnnnnnnnnctcctattaaatttttgtattattttgcctctat |
106 |
Q |
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| T |
18441664 |
tcgaggaatatgttactcatttgattttgtaatttattaattaaatttgtctttgttttctta---ctcctattaaatttgtgtattattttgcctctac |
18441760 |
T |
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| Q |
107 |
tagatctacaaccgatgcaacaaaaatcgattggaggactatcatatcaagnnnnnnnnnctcgaacgagtgtaatttcttcgattaaaaccaagaacaa |
206 |
Q |
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| T |
18441761 |
tagatctacaagcgatggaacaaaaatcgattggaggactatcatatcaagtttttttctctcgaacaagtgtattttctctgattaaaaccaagaacaa |
18441860 |
T |
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| Q |
207 |
ggaagacgacataatttgtgttc-tttttaatgaaggtnnnnnnnnctatgcaagtatcctcttttcaattttttaatagggtagcctcatttcatattc |
305 |
Q |
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| T |
18441861 |
ggaagacaacatgatttgtcttcttttttaatgaaggt--aaaaaactatgcaagtatcctattttcaatttttttcgagggtagcctcttttcatattc |
18441958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 18444550 - 18444849
Alignment:
| Q |
7 |
tcgaagaatatgttattcatttgattttgtaatttattagttaaatttgtgttggnnnnnnnnnnnctcctattaaatttttgtattattttgcctctat |
106 |
Q |
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| T |
18444550 |
tcgaggaatatgttactcatttgattttgtaatttattaattaaatttgtctttgttttctta---ctcctattaaatttgtgtattattttgcctctac |
18444646 |
T |
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| Q |
107 |
tagatctacaaccgatgcaacaaaaatcgattggaggactatcatatcaagnnnnnnnnnctcgaacgagtgtaatttcttcgattaaaaccaagaacaa |
206 |
Q |
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| T |
18444647 |
tagatctacaagcgatggaacaaaaatcgattggaggactatcatatcaagtttttttctctcgaacaagtgtattttctctgattaaaaccaagaacaa |
18444746 |
T |
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| Q |
207 |
ggaagacgacataatttgtgttc-tttttaatgaaggtnnnnnnnnctatgcaagtatcctcttttcaattttttaatagggtagcctcatttcatattc |
305 |
Q |
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| T |
18444747 |
ggaagacaacatgatttgtcttcttttttaatgaaggt--aaaaaactatgcaagtatcctattttcaatttttttcgagggtagcctcttttcatattc |
18444844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 18457798 - 18458098
Alignment:
| Q |
7 |
tcgaagaatatgttattcatttgattttgtaatttattagttaaatttgtgttggnnnnnnnnnnnctcctattaaatttttgtattattttgcctctat |
106 |
Q |
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| T |
18457798 |
tcgaggaatatgttattcatttgagtttgtaatttattatttaaatttgtctttgtttttta----cgccttttaaatttgtccattattttgcctctac |
18457893 |
T |
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| Q |
107 |
tagatctacaaccgatgcaacaaaaatcgattggaggactatcatatcaagnnnnnnnnnctcgaacgagtgtaatttcttcgattaaaaccaagaacaa |
206 |
Q |
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| T |
18457894 |
tagatctacaagcgatgcaacaaaaatcgattggaggactatcatatcaagtttttttctctcgaacaattgtgatttctctgattaaaaccaagaacaa |
18457993 |
T |
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| Q |
207 |
ggaagacgacataatttgtgttctttttaatgaaggtnnnnnnnnctatgcaagtatcctcttttcaa--ttttttaatagggtagcctcatttcatatt |
304 |
Q |
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|||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| | ||||||||||| ||||||||| |
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| T |
18457994 |
ggaagacgacatgatttgtgttttttttaatgaaggt-aaaaaaactatgcaagtatcctcttttcaatttttttttagagggtagcctcttttcatatt |
18458092 |
T |
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| Q |
305 |
cactat |
310 |
Q |
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|||||| |
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| T |
18458093 |
cactat |
18458098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 26299980 - 26300064
Alignment:
| Q |
73 |
ctcctattaaatttttgtattattttgcctctattagatctacaaccgatgcaacaaaaa-tcgattggaggactatcatatcaa |
156 |
Q |
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| T |
26299980 |
ctcctattaaattttcgtattatcttgtctatactagatctacaagcgatggaaaaaaaattcgattcagggactatcatatcaa |
26300064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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