View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19279_low_1 (Length: 562)
Name: NF19279_low_1
Description: NF19279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19279_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 279 - 535
Target Start/End: Complemental strand, 52515468 - 52515211
Alignment:
| Q |
279 |
aggtcaatgatcataaaattacaaaa-agatcaagtctatgatgcagaagaaaggataagtcttacattatgcattcaattatttccacaattggatcaa |
377 |
Q |
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| T |
52515468 |
aggtcaatgatcataaaattacaaaagagatcaagtctatgatgcagaagaaaggataagtcttacattatgcattcaattattttcacaattggatcaa |
52515369 |
T |
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| Q |
378 |
gaaattccaccgttaaattaaaaatgatatgatttattgatcgaattgttgaaaattaacttatgcatggtgcacaaatattttacttttgcatgttagg |
477 |
Q |
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| T |
52515368 |
gaaattccaccgttaaattaaaaatgatatgatttattgatcaaattgttgaaaattaacttatgcatggtgcacaaatattttacttttacatgttaga |
52515269 |
T |
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| Q |
478 |
caaagcctacaaaagaacccgtcaaaattagtctcggagttttcaagtaataacatta |
535 |
Q |
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| T |
52515268 |
caaagcctacaaaagaacccgtcaaaattagtctcggatttttcaagtaataacatta |
52515211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 52515808 - 52515658
Alignment:
| Q |
1 |
ctattgacaaattatttgtttccctcgacaaaaagataaacaaattatttgtagtcataccaggtcaaaaaaggtcaagggcacaacaacaattggatga |
100 |
Q |
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| T |
52515808 |
ctattgacaaattatttgtttccctcgacaaaaagataaacaaattatttgtagtcataccaggtcaaaaaaggtcaagggcacaacaacaattggatga |
52515709 |
T |
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| Q |
101 |
tgacacgatctaatctgtaataatttatcacatcattcaacgttaagtggc |
151 |
Q |
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| T |
52515708 |
tgacacgatctaatctgtaataatttatcacatcattcaacgttaagtggc |
52515658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 212 - 278
Target Start/End: Complemental strand, 52515597 - 52515531
Alignment:
| Q |
212 |
cttcttcatattgatattattatcataaccaaaataattggatattgaagttttgttagaatgatct |
278 |
Q |
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| T |
52515597 |
cttcttcatattgatattattatcatagccaaaataattggatattgaagttttgttagaatgatct |
52515531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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