View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19279_low_2 (Length: 418)
Name: NF19279_low_2
Description: NF19279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19279_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 61 - 401
Target Start/End: Original strand, 45754765 - 45755105
Alignment:
| Q |
61 |
tgtgacaggatgcatgtgaatagtgggcaattcaattcttttggcattaccatattaataattcaatagcttatagatatgttggtttgtaattggtaaa |
160 |
Q |
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| T |
45754765 |
tgtgataggatgcatgtgaatagtgggcaattcaattcttttggcattaccatattaataattcaatagcttatagatatgttggtttgtaattggtaaa |
45754864 |
T |
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| Q |
161 |
attgtgctcgagagattggagccagtcctgcaatattgagaggataattcttctccaaaacaagacaagatagagtttagagatatattttgtactatga |
260 |
Q |
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| T |
45754865 |
attgtgctcgagagattggagccagtcctgcaatattgagaggataattcttctccaaaacaagacaagatagagtttagagatatattttgtactatga |
45754964 |
T |
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| Q |
261 |
aaaaggccaaatcctagccccacttccattgaatttaatattgaaaactgagaagttttttgctatacaattgtctgaattgtttatgccaattatcaat |
360 |
Q |
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| T |
45754965 |
aaaaggccaaatcctagccccacttccattgaatttaatattgaaaactgagaagttgtttgctatacaattgtctgaattttttatgccaattatcaat |
45755064 |
T |
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| Q |
361 |
atctaacgattctaaaataaacacagttgagacgaatttgt |
401 |
Q |
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| T |
45755065 |
atctaacgattctaaaataaacacagttgagacgaatttgt |
45755105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 45754660 - 45754726
Alignment:
| Q |
1 |
taccgtggagtatggcaatttacaccagtaatagtattattttctattaggatatatatctgtgaca |
67 |
Q |
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| T |
45754660 |
taccgtagagtatggcaatttacaccagtaatagtattattttctattagaatatatatctgtgaca |
45754726 |
T |
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