View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19279_low_5 (Length: 296)
Name: NF19279_low_5
Description: NF19279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19279_low_5 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 6722818 - 6723098
Alignment:
| Q |
18 |
ggtttctctctgaaaaattggtacttttgatttcaaaatcttgaaagagactggacaacatgattttgaaacatacatatttgtttttgttaatttagtg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6722818 |
ggtttctctctgaaaaattggtacttttgatttcaaaatcttgaaagagactgaaaaacatgattttgaaacatacatatttgtttttgttaatttagtg |
6722917 |
T |
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| Q |
118 |
atcatatcttagtttctctcagatgatgctatttttca--tttgtcagtagactactaaagcatttgaagtgtaaataactcccttcattactatctcta |
215 |
Q |
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|||||||||| ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6722918 |
atcatatcttggtttctctctgatgatgctatttttcatttttgtcagtatactactaaagcatttgaagtgtaaataactcccttcattactatctcta |
6723017 |
T |
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| Q |
216 |
aattttggcagttactattcagttttggtcacactttggtgatgtggttttgttatggtaatgattatgtttagccacgtt |
296 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| |||||| |
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| T |
6723018 |
aattttggcagttactattcagttttggtcacaatttggtgatgtggttttgttatgggaatgattatgcttagacacgtt |
6723098 |
T |
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