View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19279_low_7 (Length: 245)
Name: NF19279_low_7
Description: NF19279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19279_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 13346748 - 13346962
Alignment:
| Q |
18 |
taataccctacccggattctaccaacatccctatttgtgaaattcttgtaagaatcaaataaaatcatatgaataatggtttgaactaaaattgtagccc |
117 |
Q |
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| T |
13346748 |
taataccctacccggattctaccaacatccctatttgtgaaattcttgtaagaatcaaataaaatcatatgaataatggtttgaactaaaattgtagccc |
13346847 |
T |
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| Q |
118 |
caaaatgaagactactccaaaaaataaatgtatataagtaacaaacacacgatattctttagaatagtttgctaggtgttcattacacggctccttacca |
217 |
Q |
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| T |
13346848 |
caaaatgaagactacttcaaaaaataaatgtatataagtaacgaacacacgatattctttagaatagtttgctaggtgttcattacacgactccttacca |
13346947 |
T |
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| Q |
218 |
ttgtactccggtgtt |
232 |
Q |
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| T |
13346948 |
ttgtactccggtgtt |
13346962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 101 - 235
Target Start/End: Original strand, 13346970 - 13347102
Alignment:
| Q |
101 |
aactaaaattgtagccccaaaatgaagactactccaaaaaataaatgtatataagtaacaaacacacgatattctttagaatagtttgctaggtgttcat |
200 |
Q |
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| T |
13346970 |
aactaaaattgtagccccaaaatgaagactactccaaaaaatagatgtatataagtaacaaacac--gatattctttagaatagtttgctaggtgttcat |
13347067 |
T |
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| Q |
201 |
tacacggctccttaccattgtactccggtgttcat |
235 |
Q |
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| T |
13347068 |
tacacggctctttaccattgtactccagtgttcat |
13347102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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