View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19279_low_8 (Length: 229)
Name: NF19279_low_8
Description: NF19279
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19279_low_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 6968215 - 6968015
Alignment:
| Q |
13 |
aatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgcctcttacttagaccaatttctttac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968215 |
aatatcacatgactccacttacctcccctttcatattcaccattacctgtgcaatttgtgtaaagctttctctgcctcttacttagaccaatttctttac |
6968116 |
T |
|
| Q |
113 |
cttgttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatgactacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968115 |
cttgttccaaaacatggttaaggtaagatttctcaacgaaatcgcgatgactacgatgaaatgtgagaaggtagaatcttttgtctgaagctggatagaa |
6968016 |
T |
|
| Q |
213 |
t |
213 |
Q |
| |
|
| |
|
|
| T |
6968015 |
t |
6968015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University