View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1927_high_4 (Length: 370)
Name: NF1927_high_4
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_high_4 |
 | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0012 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 113 - 338
Target Start/End: Original strand, 166709 - 166939
Alignment:
| Q |
113 |
aataaccattatagcgtaatagaatttgaacgttctgttaattgattgtttgcaagtgttcacctttgaataatgaatttgtatgatgtgaaatagcgat |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
166709 |
aatacccattatagcgtaatagaatttgaacgttctgttaattgattgtttgcaagtgttcacctctgaataattaatttgtatgatgtgaattagcgat |
166808 |
T |
|
| Q |
213 |
atcgtggcgtatagaagtataagatacaactagtaaatctttcnnnnnnnnnnnncatacaactagtaaaatacatgt-----gacgttgctggaattgt |
307 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
166809 |
atcgtggcatatagaagtataagatacaactagtaaatctttcaaaaaataaaaacatacaactagtaaaatacatgtgtatagacgttgctggaattgt |
166908 |
T |
|
| Q |
308 |
tcaagtttgttattattgaagtatatgaact |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
166909 |
tcaagtttgttattattgaagtatatgaact |
166939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 51203574 - 51203665
Alignment:
| Q |
52 |
atgaatgagatagtttaacctggatggtgttgactgcaagttgcaatgatcagtgttgttaaataaccattatagcgtaatagaatttgaac |
143 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
51203574 |
atgaatgatatagtttaacctggatggtgttgcctgcaagttgcaatgatcagcgttgtcaaatagtgattatagtgtaatagaatttgaac |
51203665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University