View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1927_high_9 (Length: 302)

Name: NF1927_high_9
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1927_high_9
NF1927_high_9
[»] chr2 (15 HSPs)
chr2 (107-302)||(9718260-9718455)
chr2 (245-301)||(44424555-44424611)
chr2 (244-301)||(15851490-15851547)
chr2 (256-301)||(35178882-35178927)
chr2 (245-301)||(27297537-27297593)
chr2 (124-175)||(18324911-18324962)
chr2 (110-165)||(19159944-19159999)
chr2 (110-169)||(23250323-23250382)
chr2 (110-168)||(19967418-19967476)
chr2 (245-302)||(8065160-8065217)
chr2 (124-169)||(16204834-16204879)
chr2 (125-174)||(27314861-27314910)
chr2 (110-159)||(32458311-32458360)
chr2 (124-168)||(35727437-35727481)
chr2 (124-168)||(40967388-40967432)
[»] chr1 (17 HSPs)
chr1 (245-301)||(3143362-3143418)
chr1 (255-301)||(32047411-32047457)
chr1 (245-302)||(12845073-12845130)
chr1 (245-301)||(5085177-5085233)
chr1 (245-301)||(16582492-16582548)
chr1 (245-297)||(33231799-33231851)
chr1 (255-301)||(48721956-48722003)
chr1 (255-301)||(3831018-3831064)
chr1 (255-301)||(30336028-30336074)
chr1 (245-302)||(44652945-44653002)
chr1 (131-168)||(50939237-50939274)
chr1 (124-168)||(16033467-16033511)
chr1 (110-178)||(17669635-17669703)
chr1 (245-301)||(29140742-29140798)
chr1 (123-159)||(41711726-41711762)
chr1 (124-168)||(49222816-49222860)
chr1 (245-277)||(51997170-51997202)
[»] chr7 (15 HSPs)
chr7 (245-302)||(1324668-1324725)
chr7 (253-302)||(37673705-37673754)
chr7 (245-297)||(49100631-49100683)
chr7 (244-302)||(25098996-25099054)
chr7 (255-297)||(48767534-48767576)
chr7 (245-301)||(48610225-48610281)
chr7 (124-175)||(6384844-6384895)
chr7 (114-168)||(7262680-7262734)
chr7 (124-158)||(25602927-25602961)
chr7 (256-301)||(4089589-4089634)
chr7 (124-168)||(5458088-5458132)
chr7 (131-167)||(15015242-15015278)
chr7 (244-292)||(29723420-29723468)
chr7 (124-168)||(30033814-30033858)
chr7 (124-168)||(42829251-42829295)
[»] chr3 (14 HSPs)
chr3 (255-301)||(12077834-12077880)
chr3 (235-301)||(30475990-30476056)
chr3 (245-301)||(29676830-29676886)
chr3 (256-302)||(40645644-40645690)
chr3 (257-297)||(41727333-41727373)
chr3 (107-155)||(45334202-45334250)
chr3 (245-301)||(50525067-50525123)
chr3 (105-168)||(37243224-37243287)
chr3 (131-169)||(38573597-38573635)
chr3 (245-302)||(5504632-5504689)
chr3 (107-168)||(47099035-47099096)
chr3 (124-168)||(22486683-22486727)
chr3 (124-168)||(34962929-34962973)
chr3 (131-167)||(39100440-39100476)
[»] chr5 (11 HSPs)
chr5 (245-302)||(21574967-21575024)
chr5 (245-302)||(27925337-27925394)
chr5 (104-168)||(17708074-17708138)
chr5 (110-168)||(36623177-36623235)
chr5 (245-302)||(25017761-25017818)
chr5 (245-302)||(27798116-27798173)
chr5 (245-302)||(34877626-34877683)
chr5 (245-301)||(3247362-3247418)
chr5 (124-168)||(8545006-8545050)
chr5 (124-168)||(39914901-39914945)
chr5 (103-167)||(43108570-43108634)
[»] chr4 (12 HSPs)
chr4 (244-301)||(25477184-25477241)
chr4 (245-301)||(20262483-20262539)
chr4 (255-302)||(5448632-5448679)
chr4 (244-302)||(43800757-43800815)
chr4 (244-302)||(50438925-50438983)
chr4 (245-302)||(16070391-16070448)
chr4 (126-175)||(39311662-39311711)
chr4 (124-168)||(29910461-29910505)
chr4 (245-301)||(51787731-51787787)
chr4 (110-168)||(22448593-22448651)
chr4 (255-301)||(56217112-56217158)
chr4 (244-301)||(22750931-22750988)
[»] chr8 (11 HSPs)
chr8 (255-301)||(25185000-25185046)
chr8 (124-168)||(10967212-10967256)
chr8 (110-158)||(29652228-29652276)
chr8 (255-301)||(16002813-16002859)
chr8 (110-168)||(17806465-17806523)
chr8 (124-165)||(18533672-18533713)
chr8 (260-301)||(25198264-25198305)
chr8 (244-297)||(38773443-38773496)
chr8 (245-301)||(10396318-10396374)
chr8 (245-297)||(16355785-16355837)
chr8 (245-301)||(40337281-40337337)
[»] scaffold0121 (1 HSPs)
scaffold0121 (245-302)||(24095-24152)
[»] chr6 (6 HSPs)
chr6 (244-301)||(5895690-5895747)
chr6 (110-168)||(12904320-12904378)
chr6 (110-168)||(13496116-13496174)
chr6 (114-168)||(28951399-28951453)
chr6 (124-168)||(2213297-2213341)
chr6 (274-302)||(3307998-3308026)
[»] scaffold0533 (1 HSPs)
scaffold0533 (124-168)||(8868-8912)
[»] scaffold0016 (1 HSPs)
scaffold0016 (124-168)||(99037-99081)
[»] scaffold0008 (1 HSPs)
scaffold0008 (124-168)||(122891-122935)


Alignment Details
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 107 - 302
Target Start/End: Complemental strand, 9718455 - 9718260
Alignment:
Q  107 ggatttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcacatagacactttatctcattttcggatgattgattctag 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||||||    
T  9718455 ggatttgaactctggaacttgcaaatattatgcattgttcttatcaactgagttaagctcacatagacaccttatctcatttttggatgattgattctag 9718356  T
Q  207 ttcactcgaattattagaaaaagtttatcattgttagttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9718355 ttcactcgaattattagaaaaagtttatcattgttagttactccctccgtcccttaatgtagccatccattgcatttttcacatttcttaagaaat 9718260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 44424555 - 44424611
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||    
T  44424555 tactccctccgtcccttaatgtaggcactcattgcatttttcacatttcttaagaaa 44424611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 15851490 - 15851547
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||| |||||||||||||||| || | ||||  |||||||||||||||||||||    
T  15851490 ttactccctctgtcccttaatgtagacatctattgtctttttcacatttcttaagaaa 15851547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 35178927 - 35178882
Alignment:
Q  256 tcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||||||||| |||||||||  |||||||||||||||||||||    
T  35178927 tcccttaatgtaggcacccattgtttttttcacatttcttaagaaa 35178882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 27297537 - 27297593
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| |||||||||||||||  | ||| |||| |||||||||||||||||||||    
T  27297537 tactccctctgtcccttaatgtaaaccccctttgcttttttcacatttcttaagaaa 27297593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 175
Target Start/End: Original strand, 18324911 - 18324962
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcacatagaca 175  Q
    |||||| |||||||||||||| |||| ||| ||||| |||||||||||||||    
T  18324911 cttgcatatattatgcattgtccttaccaactgagttaagctcacatagaca 18324962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 19159999 - 19159944
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagct 165  Q
    ||||||||| ||| |||||| |||||||||||||||| |||||| ||||| |||||    
T  19159999 tttgaactccgaaccttgcatatattatgcattgttcatatcaactgagttaagct 19159944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 23250323 - 23250382
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcaca 169  Q
    ||||||| ||| | |||||| ||||||||||||||||||| ||| ||||| |||||||||    
T  23250323 tttgaaccctggaccttgcatatattatgcattgttcttaccaactgagttaagctcaca 23250382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 19967476 - 19967418
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||||| ||| |||||| |||||||||||||||| |||||| ||||  ||||||||    
T  19967476 tttgaactccgaaccttgcacatattatgcattgttcatatcaactgagctaagctcac 19967418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 8065217 - 8065160
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||||||||||||| | ||||||||  |||||||||||| ||||||||    
T  8065217 tactccctccgtcccttaatgtaggctcccattgcccttttcacatttcctaagaaat 8065160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 16204834 - 16204879
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcaca 169  Q
    |||||| |||||||||||||| |||||||| ||||| |||||||||    
T  16204834 cttgcatatattatgcattgtccttatcaactgagttaagctcaca 16204879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 27314910 - 27314861
Alignment:
Q  125 ttgcaaatattatgcattgttcttatcaattgagtcaagctcacatagac 174  Q
    ||||| || |||||||||||||||| ||| ||||| ||||||||||||||    
T  27314910 ttgcatattttatgcattgttcttaccaactgagttaagctcacatagac 27314861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 32458360 - 32458311
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagt 159  Q
    ||||||| ||| | |||||| ||||||||||||||||||||||| |||||    
T  32458360 tttgaaccctggaccttgcatatattatgcattgttcttatcaactgagt 32458311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 35727481 - 35727437
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||    
T  35727481 cttgcatatattatgcattgttcttaccaactgagttaagctcac 35727437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 40967388 - 40967432
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| |||||||| ||||| ||||||||    
T  40967388 cttgcatatattatgcattgtccttatcaactgagttaagctcac 40967432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 3143362 - 3143418
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||    
T  3143362 tactccctctgtcccttaatgtaggcacccattgcttttttcacatttcttaagaaa 3143418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 32047411 - 32047457
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||    
T  32047411 gtcccttaatgtaggcacccattgcttttttcacatttcttaagaaa 32047457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 12845130 - 12845073
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||||||||| || || |||||||||||||||||||||||||||||||    
T  12845130 tactccctccgtcccttaatataaccccccattgcatttttcacatttcttaagaaat 12845073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 5085233 - 5085177
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | |||||||||||||| |||||||||| |||||||||||| ||||||||    
T  5085233 tactccctccgtcccttaatgtaggcacccattgcctttttcacattttttaagaaa 5085177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 16582492 - 16582548
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| |||| |||||||||||||| ||||||  |||||||||||||||||||||    
T  16582492 tactccctctgttccttaatgtagccatccattgtctttttcacatttcttaagaaa 16582548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 33231799 - 33231851
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaa 297  Q
    ||||||| | ||||||||||||||||| ||||||| |||||||||||||||||    
T  33231799 tactccctccgtcccttaatgtagccatccattgcctttttcacatttcttaa 33231851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 48722003 - 48721956
Alignment:
Q  255 gtcccttaatgtagccacccattg-catttttcacatttcttaagaaa 301  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||    
T  48722003 gtcccttaatgtaggcacccattgccttttttcacatttcttaagaaa 48721956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 3831018 - 3831064
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||||||||  |||| |||||||||||||||||| ||||||||    
T  3831018 gtcccttaatgtaaacacctattgcatttttcacattttttaagaaa 3831064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 30336028 - 30336074
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||| |||||||| ||| |||||| |||||||||||||||||||||    
T  30336028 gtcccataatgtagacactcattgcttttttcacatttcttaagaaa 30336074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 44653002 - 44652945
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||| ||||||||||||  ||||||  |||||||||||||||||||||    
T  44653002 tactccctccgtcctttaatgtagccattcattgccattttcacatttcttaagaaat 44652945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 50939274 - 50939237
Alignment:
Q  131 atattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  50939274 atattatgcattgttcttattaattgaatcaagctcac 50939237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 16033467 - 16033511
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  16033467 cttgcatatattatgcattgtccctatcaactgagtcaagctcac 16033511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 178
Target Start/End: Complemental strand, 17669703 - 17669635
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcacatagacactt 178  Q
    ||||||| | ||| |||||| ||||||| |||||| | |||||| |||||||||||||||  |||||||    
T  17669703 tttgaaccccgaaccttgcatatattatacattgtccctatcaactgagtcaagctcacaaggacactt 17669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 29140798 - 29140742
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | |||| ||||||||| || | ||||| |||||||||||||||||||||    
T  29140798 tactccctccgtcctttaatgtagtcatctattgcctttttcacatttcttaagaaa 29140742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 159
Target Start/End: Original strand, 41711726 - 41711762
Alignment:
Q  123 acttgcaaatattatgcattgttcttatcaattgagt 159  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  41711726 acttgcatatattatgcattgttcttatcaactgagt 41711762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 49222860 - 49222816
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||||| |||||||||| |||||||||||| ||||||||    
T  49222860 cttgcatatattgtgcattgttcctatcaattgagttaagctcac 49222816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 277
Target Start/End: Complemental strand, 51997202 - 51997170
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccatt 277  Q
    ||||||| |||||||||||||||||||||||||    
T  51997202 tactccctctgtcccttaatgtagccacccatt 51997170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 1324668 - 1324725
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| ||||||||||||||| |||| |||||| ||||||||||||||||||||||    
T  1324668 tactccctctgtcccttaatgtatccactcattgcctttttcacatttcttaagaaat 1324725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 37673705 - 37673754
Alignment:
Q  253 ctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    |||||||||||||||| |||||||||  ||||||||||||||||||||||    
T  37673705 ctgtcccttaatgtagacacccattgtctttttcacatttcttaagaaat 37673754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 49100631 - 49100683
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaa 297  Q
    ||||||| ||||||||||||||||||||||||||| |||||| ||| ||||||    
T  49100631 tactccctctgtcccttaatgtagccacccattgcctttttcgcatctcttaa 49100683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 25099054 - 25098996
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    |||||||| | |||||||||| || || |||||||||||||||||||||||||| ||||    
T  25099054 ttactccctccgtcccttaatataaccccccattgcatttttcacatttcttaaaaaat 25098996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 297
Target Start/End: Original strand, 48767534 - 48767576
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaa 297  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  48767534 gtcccttaatgtaggcacccattgcttttttcacatttcttaa 48767576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 48610281 - 48610225
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| || |||||||||||||| | | |||||||||||||||||| ||||||||    
T  48610281 tactccctctctcccttaatgtagctatctattgcatttttcacattttttaagaaa 48610225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 175
Target Start/End: Complemental strand, 6384895 - 6384844
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcacatagaca 175  Q
    |||||| |||||||||||||| ||||| || ||||| |||||||||||||||    
T  6384895 cttgcatatattatgcattgtccttattaactgagttaagctcacatagaca 6384844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 7262680 - 7262734
Alignment:
Q  114 aactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||| | |||| | ||||||||||||||||||||||||||||  ||||||||    
T  7262680 aactctggatcttgtatatattatgcattgttcttatcaattgaggtaagctcac 7262734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 25602961 - 25602927
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgag 158  Q
    |||||| ||||||||||||||||||||||||||||    
T  25602961 cttgcatatattatgcattgttcttatcaattgag 25602927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 301
Target Start/End: Complemental strand, 4089634 - 4089589
Alignment:
Q  256 tcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||||||||| || ||||||  |||||||||||||||||||||    
T  4089634 tcccttaatgtaggcatccattgactttttcacatttcttaagaaa 4089589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 5458088 - 5458132
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||||||||||||||||||||||| ||||  ||||||||    
T  5458088 cttgcatatattatgcattgttcttatcaactgagctaagctcac 5458132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 15015278 - 15015242
Alignment:
Q  131 atattatgcattgttcttatcaattgagtcaagctca 167  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  15015278 atattatgcattgttcttatcaactgagttaagctca 15015242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 29723420 - 29723468
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacattt 292  Q
    |||||||| | |||||||||||||| |||||||||  ||||||||||||    
T  29723420 ttactccctccgtcccttaatgtaggcacccattgtctttttcacattt 29723468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 30033858 - 30033814
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||||||||||||||||||||||| ||| ||||  ||||||||    
T  30033858 cttgcaaatattatgcattgttcttaccaactgagctaagctcac 30033814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 42829251 - 42829295
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  42829251 cttgcatatattatgcattgtccctatcaactgagtcaagctcac 42829295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 12077880 - 12077834
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||||||||| |||||||||||||||||| |||||||||||||    
T  12077880 gtcccttaatgtaggcacccattgcatttttcaaatttcttaagaaa 12077834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 235 - 301
Target Start/End: Original strand, 30475990 - 30476056
Alignment:
Q  235 cattgttagttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||| ||| |||||||| | |||||||||||||| |||||||||| |||||||||||| ||||||||    
T  30475990 cattattacttactccctccgtcccttaatgtaggcacccattgcctttttcacattttttaagaaa 30476056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 29676886 - 29676830
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | |||||||||||||| |||||||||| ||||||| |||||||||||||    
T  29676886 tactccctccgtcccttaatgtaggcacccattgcctttttcatatttcttaagaaa 29676830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 256 - 302
Target Start/End: Original strand, 40645644 - 40645690
Alignment:
Q  256 tcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||||||||| || ||||||| ||||||||||||||||||||||    
T  40645644 tcccttaatgtaggcatccattgcctttttcacatttcttaagaaat 40645690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 41727373 - 41727333
Alignment:
Q  257 cccttaatgtagccacccattgcatttttcacatttcttaa 297  Q
    ||||||||||||||| ||||||| |||||||||||||||||    
T  41727373 cccttaatgtagccatccattgcctttttcacatttcttaa 41727333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 45334250 - 45334202
Alignment:
Q  107 ggatttgaactctgaaacttgcaaatattatgcattgttcttatcaatt 155  Q
    |||||||||| | ||| |||||| |||||||||||||||||||||||||    
T  45334250 ggatttgaaccccgaaccttgcatatattatgcattgttcttatcaatt 45334202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 50525123 - 50525067
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| |||||||||||||||  ||||| || | |||||||||||||||||||||    
T  50525123 tactccctctgtcccttaatgtaagcacccttttcttttttcacatttcttaagaaa 50525067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 168
Target Start/End: Complemental strand, 37243287 - 37243224
Alignment:
Q  105 caggatttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||||||||| ||||| |||||| ||||||| |||||||| || ||||||||| || |||||    
T  37243287 caggatttgaaccctgaaccttgcatatattattcattgttcctaccaattgagttaaactcac 37243224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 131 - 169
Target Start/End: Original strand, 38573597 - 38573635
Alignment:
Q  131 atattatgcattgttcttatcaattgagtcaagctcaca 169  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  38573597 atattatgcattgttcttatcaactgagttaagctcaca 38573635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 5504689 - 5504632
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||||||||||||| ||||| || |  |||||||||||||||||||||    
T  5504689 tactccctcggtcccttaatgtaggcacccgtttcccttttcacatttcttaagaaat 5504632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 47099035 - 47099096
Alignment:
Q  107 ggatttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||||||| | ||| |||||| |||||||||||| |||||||||| ||||  ||||||||    
T  47099035 ggatttgaaccccgaaccttgcatatattatgcattattcttatcaactgagctaagctcac 47099096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 22486727 - 22486683
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||||||||||||||||||| ||| ||||| ||||||||    
T  22486727 cttgcatatattatgcattgttcttaccaactgagttaagctcac 22486683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 34962973 - 34962929
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||| |||||||||| |||||||||||||| ||||||||    
T  34962973 cttgcatatagtatgcattgtccttatcaattgagttaagctcac 34962929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 39100440 - 39100476
Alignment:
Q  131 atattatgcattgttcttatcaattgagtcaagctca 167  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  39100440 atattatgcattgttcttatcaactgagttaagctca 39100476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 21575024 - 21574967
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||||||||||||| |||||||||  ||||||||||||||||||||||    
T  21575024 tactccctccgtcccttaatgtaggcacccattgtctttttcacatttcttaagaaat 21574967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 27925337 - 27925394
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | ||||||| |||||| |||||||||| ||||||||||||||||||||||    
T  27925337 tactccctccgtccctttatgtaggcacccattgcttttttcacatttcttaagaaat 27925394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 168
Target Start/End: Complemental strand, 17708138 - 17708074
Alignment:
Q  104 ccaggatttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||||||||||||||| |||||| || ||||||||||| | |||||| ||||| | ||||||    
T  17708138 ccaggatttgaactctgaaccttgcatattttatgcattgtccatatcaactgagttatgctcac 17708074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 36623177 - 36623235
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||||||  | |||||| |||||||||||| |||||||||| ||||| ||||||||    
T  36623177 tttgaactctagaccttgcatatattatgcattattcttatcaactgagttaagctcac 36623235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 25017818 - 25017761
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||||||||||||| ||| |||||  |||||||| |||||||||||||    
T  25017818 tactccctccgtcccttaatgtagacactcattgtctttttcacgtttcttaagaaat 25017761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 27798116 - 27798173
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | ||||||||||| || || |||||| ||||||||||||| |||||||||    
T  27798116 tactccctccgtcccttaatgcaggcatccattgtatttttcacattttttaagaaat 27798173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 34877626 - 34877683
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||| ||||||||| ||  |||||| ||||||||||||||||||||||    
T  34877626 tactccctccgtcctttaatgtagacattcattgcctttttcacatttcttaagaaat 34877683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 3247418 - 3247362
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | || |||||| ||||  ||||||||| |||||||||||||||||||||    
T  3247418 tactccctccgttccttaacgtagatacccattgcctttttcacatttcttaagaaa 3247362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 8545006 - 8545050
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| |||||||| ||||| ||||||||    
T  8545006 cttgcatatattatgcattgtccttatcaactgagttaagctcac 8545050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 39914945 - 39914901
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||    
T  39914945 cttgcatatattatgcattgtccttaccaattgagttaagctcac 39914901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 43108634 - 43108570
Alignment:
Q  103 tccaggatttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctca 167  Q
    |||| |||| |||| ||||| |||||| |||||||||||||| |||| ||| ||||| |||||||    
T  43108634 tccaagattcgaaccctgaaccttgcatatattatgcattgtccttaccaactgagttaagctca 43108570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 25477184 - 25477241
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||||  ||||||||||||||| || ||||||| |||||||||||||||||||||    
T  25477184 ttactccctatgtcccttaatgtaggcatccattgcttttttcacatttcttaagaaa 25477241  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 20262539 - 20262483
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| |||||||||||| ||| ||| |||||| |||||||||||||||||||||    
T  20262539 tactccctctgtcccttaatatagacactcattgcctttttcacatttcttaagaaa 20262483  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 302
Target Start/End: Original strand, 5448632 - 5448679
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    |||||||||||||| || ||||||| ||||||||||||||||||||||    
T  5448632 gtcccttaatgtaggcatccattgcctttttcacatttcttaagaaat 5448679  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Original strand, 43800757 - 43800815
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    |||||||| | ||||||||| |||| |||||||||| |||||||||||| |||||||||    
T  43800757 ttactccctccgtcccttaacgtaggcacccattgcctttttcacatttgttaagaaat 43800815  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 302
Target Start/End: Complemental strand, 50438983 - 50438925
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    |||||||| | |||||||||| || || |||||| ||||||||||||||||||||||||    
T  50438983 ttactccctccgtcccttaatataaccccccattacatttttcacatttcttaagaaat 50438925  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 16070391 - 16070448
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||||||||||||| |||| ||||  ||||||||||||||||||||||    
T  16070391 tactccctccgtcccttaatgtaggcacctattgtctttttcacatttcttaagaaat 16070448  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 39311711 - 39311662
Alignment:
Q  126 tgcaaatattatgcattgttcttatcaattgagtcaagctcacatagaca 175  Q
    |||| |||||||||| ||| |||||||||||||||||| |||||||||||    
T  39311711 tgcatatattatgcaatgtccttatcaattgagtcaagttcacatagaca 39311662  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 29910505 - 29910461
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| |||||||||||||| ||||||||    
T  29910505 cttgcatatattatgcattgtccttatcaattgagttaagctcac 29910461  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Original strand, 51787731 - 51787787
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | || ||||||||||| ||| |||| |||||||||||||||||||||||    
T  51787731 tactccctccgttccttaatgtaggcactcattccatttttcacatttcttaagaaa 51787787  T

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Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 22448651 - 22448593
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||||  |||| |||||| |||||| |||||||||||||||||||||| || |||||    
T  22448651 tttgaaccttgaatcttgcatatattacgcattgttcttatcaattgagttaaactcac 22448593  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 56217158 - 56217112
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||||| |||| |||||||||| |||||||||||| ||||||||    
T  56217158 gtcccttaacgtagacacccattgcttttttcacattttttaagaaa 56217112  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 22750988 - 22750931
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||| | |||||||||||||  | | | ||||||||||||||||||||||||||    
T  22750988 ttactccctccgtcccttaatgtaatccctctttgcatttttcacatttcttaagaaa 22750931  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 25185000 - 25185046
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||||||||  |||||||||| |||||||||||||||||||||    
T  25185000 gtcccttaatgtatgcacccattgcctttttcacatttcttaagaaa 25185046  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 10967256 - 10967212
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||||||||||||||||||||||||||||| || |||||    
T  10967256 cttgcatatattatgcattgttcttatcaattgagttaaactcac 10967212  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 158
Target Start/End: Complemental strand, 29652276 - 29652228
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgag 158  Q
    ||||||||||| | |||||| ||||||||||||||||||||||| ||||    
T  29652276 tttgaactctggaccttgcatatattatgcattgttcttatcaactgag 29652228  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 16002859 - 16002813
Alignment:
Q  255 gtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||||||||| |||||||| | |||||||||||| ||||||||    
T  16002859 gtcccttaatgtagacacccatttcctttttcacattttttaagaaa 16002813  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 17806465 - 17806523
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||| | ||||||||||||||||||||||| |||||| ||| ||||| || |||||    
T  17806465 tttgaaccccgaaacttgcaaatattatgcattattcttaccaactgagttaatctcac 17806523  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 165
Target Start/End: Complemental strand, 18533713 - 18533672
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagct 165  Q
    |||||| ||||||||||||||||||| ||| |||||||||||    
T  18533713 cttgcatatattatgcattgttcttaccaactgagtcaagct 18533672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 301
Target Start/End: Original strand, 25198264 - 25198305
Alignment:
Q  260 ttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||||| || ||||||| |||||||||||||||||||||    
T  25198264 ttaatgtaggcatccattgcctttttcacatttcttaagaaa 25198305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 297
Target Start/End: Complemental strand, 38773496 - 38773443
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaa 297  Q
    |||||||| | |||||||||||||| || ||||||  |||||||||||||||||    
T  38773496 ttactccctccgtcccttaatgtaggcaaccattgtctttttcacatttcttaa 38773443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 10396374 - 10396318
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | |||||||| ||||  |||||||| |||||||||||||| ||||||||    
T  10396374 tactccctccgtcccttattgtatgcacccatttcatttttcacatttattaagaaa 10396318  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 16355785 - 16355837
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaa 297  Q
    ||||||| | |||||||||| ||  | ||||||||||||||||||||||||||    
T  16355785 tactccctccgtcccttaatataatcccccattgcatttttcacatttcttaa 16355837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 40337337 - 40337281
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    ||||||| | |||||||||||||| || ||||||  |||||||||||||||| ||||    
T  40337337 tactccctccgtcccttaatgtaggcatccattgtctttttcacatttcttatgaaa 40337281  T

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Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 24095 - 24152
Alignment:
Q  245 tactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaat 302  Q
    ||||||| | |||| ||||||||| ||  |||||||||||||||||||||||||||||    
T  24095 tactccctccgtcctttaatgtaggcattcattgcatttttcacatttcttaagaaat 24152  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 5895690 - 5895747
Alignment:
Q  244 ttactccccctgtcccttaatgtagccacccattgcatttttcacatttcttaagaaa 301  Q
    |||||||| | |||||||||||||| || ||||||  |||||||||||||||||||||    
T  5895690 ttactccctccgtcccttaatgtaggcatccattgtctttttcacatttcttaagaaa 5895747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 12904320 - 12904378
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||||| ||| |||||| |||||||||||||||| |||||| ||||  ||||||||    
T  12904320 tttgaactccgaaccttgcatatattatgcattgttcatatcaactgaggtaagctcac 12904378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 168
Target Start/End: Complemental strand, 13496174 - 13496116
Alignment:
Q  110 tttgaactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||||| | | |||||| |||||||||||||||| |||||| ||||| ||||||||    
T  13496174 tttgaactccggaccttgcatatattatgcattgttcatatcaactgagttaagctcac 13496116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 168
Target Start/End: Complemental strand, 28951453 - 28951399
Alignment:
Q  114 aactctgaaacttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    ||||||||| |||||| |||||||||||||||| || ||| ||||| ||||||||    
T  28951453 aactctgaaccttgcatatattatgcattgttcataccaactgagttaagctcac 28951399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 2213341 - 2213297
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| ||||||||||||||||||| ||||||||| ||| ||||    
T  2213341 cttgcatatattatgcattgttcttaccaattgagttaagttcac 2213297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 3308026 - 3307998
Alignment:
Q  274 cattgcatttttcacatttcttaagaaat 302  Q
    |||||||||||||||||||||||||||||    
T  3308026 cattgcatttttcacatttcttaagaaat 3307998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 8868 - 8912
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| |||| ||||||||| ||||||||    
T  8868 cttgcatatattatgcattgtccttaccaattgagttaagctcac 8912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 99081 - 99037
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||| | |||||| ||||||||||||||    
T  99081 cttgcatatattatgcattgtccctatcaactgagtcaagctcac 99037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 122935 - 122891
Alignment:
Q  124 cttgcaaatattatgcattgttcttatcaattgagtcaagctcac 168  Q
    |||||| |||||||||||||||| || ||||||||| ||||||||    
T  122935 cttgcatatattatgcattgttcataccaattgagttaagctcac 122891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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