View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_1 (Length: 204)
Name: NF1927_low_1
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_1 |
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| [»] scaffold0041 (2 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 87550 - 87360
Alignment:
| Q |
1 |
acggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87550 |
acggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttg |
87451 |
T |
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| Q |
101 |
aaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
191 |
Q |
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| T |
87450 |
aaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttcaatttcttctttgactccatattcatctca |
87360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0041; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 3 - 191
Target Start/End: Complemental strand, 95564 - 95390
Alignment:
| Q |
3 |
ggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaa |
102 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
95564 |
ggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgca |
95465 |
T |
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| Q |
103 |
ccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
191 |
Q |
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| T |
95464 |
ccattcctcctgcaatggcatg--------------ccacactcttgttcacatttttcaatttcttttttgactccatattcatctca |
95390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 40878733 - 40878923
Alignment:
| Q |
1 |
acggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40878733 |
acggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttg |
40878832 |
T |
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| Q |
101 |
aaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
191 |
Q |
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| T |
40878833 |
aaccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttcaatttcttctttgactccatattcatctca |
40878923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 3 - 191
Target Start/End: Original strand, 40870718 - 40870892
Alignment:
| Q |
3 |
ggaattttggagtaagaactgaaattcacaggctcacaagcatgctcggcgtgaccctgagggaagtagaagacctgtgagttaacttctggcatttgaa |
102 |
Q |
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|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
40870718 |
ggaattttggagtaagcactgaaattcaccggctcacaagcatgctcggcgtgaccctgagggaagtaaaagacctgtgagttaacttctggcatttgca |
40870817 |
T |
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| Q |
103 |
ccattcctcctgcaacggcatgccatagctgagggtccacactcttgttcacatttttaaatttcttctttgactccatattcatctca |
191 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
40870818 |
ccattcctcctgcaatggcatg--------------ccacactcttgttcacatttttcaatttcttttttgactccatattcatctca |
40870892 |
T |
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