View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_13 (Length: 308)
Name: NF1927_low_13
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 40311749 - 40311484
Alignment:
| Q |
16 |
gttgctgcaatatcttcattctttcacttattttctctcttctcacctgaaatccannnnnnn-gcaacatttattaacaatgagacatgaactttgagg |
114 |
Q |
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| T |
40311749 |
gttgctgcaatatcttcattctttcacttattttctctcttctcacctgaaatccattttttttgcaacaattattaacaatgagacatgaactttgagg |
40311650 |
T |
|
| Q |
115 |
caattgaggaattccctttcagttgtaaattgtaataacctaagtagctccgacacttttgtccggctacacattaac-acatgttattacattcggcgt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
40311649 |
caattgaggaattccctttcagttgtaaattgtaataacctaagtagctccgacacttttgtccggctacacactaacggcatgttattacattcggcgt |
40311550 |
T |
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| Q |
214 |
ttgtgtccctgttagggcttcataggtaaaaactgtattgcataccctttcagcaaggctgtggct |
279 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40311549 |
ttgtgtccgtgttagggcttcataggtaaaaactgtattgcataccctttcagcaaggctgtggct |
40311484 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 45176003 - 45175953
Alignment:
| Q |
16 |
gttgctgcaatatcttcattctttcacttattttctctcttctcacctgaa |
66 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||| ||||||| |
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| T |
45176003 |
gttgctgcaacttcttcatcctttcacttattttctctcttcttacctgaa |
45175953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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