View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_15 (Length: 301)
Name: NF1927_low_15
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_15 |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 33811491 - 33811210
Alignment:
| Q |
20 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33811491 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33811392 |
T |
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| Q |
120 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattggtactattgtggctggaaaccaaca |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
33811391 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33811292 |
T |
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| Q |
220 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactc |
301 |
Q |
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| T |
33811291 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactc |
33811210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 301
Target Start/End: Complemental strand, 33816409 - 33816128
Alignment:
| Q |
20 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33816409 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttactgacatggtagaat |
33816310 |
T |
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| Q |
120 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattggtactattgtggctggaaaccaaca |
219 |
Q |
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| T |
33816309 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33816210 |
T |
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| Q |
220 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactc |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33816209 |
attctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactc |
33816128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 20 - 219
Target Start/End: Complemental strand, 33807837 - 33807638
Alignment:
| Q |
20 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttaccaattgccaagtttgtcaatttgttgctgacatggtagaat |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
33807837 |
cattaaatgcttggttcttattttccaatccttgctgcaccatctttgacaatagttacccattgccaagtttgtcaatttgttactgacatggtagaat |
33807738 |
T |
|
| Q |
120 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttccaattgatgcattattggtactattgtggctggaaaccaaca |
219 |
Q |
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| T |
33807737 |
ttttaccaccgcaagctattattcataggcatgctagtggagaaaaattcaacatttcccattgatgcattattgttactattgtggctggaaaccaaca |
33807638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 25003452 - 25003511
Alignment:
| Q |
214 |
ccaacaattctccccctccagccaaagggaaactatccttagattagtttggggttgctg |
273 |
Q |
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|||||||||||| ||||||||||||||||||| |||| | | |||||||||||||||||| |
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| T |
25003452 |
ccaacaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctg |
25003511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 213 - 243
Target Start/End: Complemental strand, 14178355 - 14178325
Alignment:
| Q |
213 |
accaacaattctccccctccagccaaaggga |
243 |
Q |
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| T |
14178355 |
accaacaattctccccctccagccaaaggga |
14178325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Original strand, 28607519 - 28607548
Alignment:
| Q |
214 |
ccaacaattctccccctccagccaaaggga |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28607519 |
ccaacaattctccccctccagccaaaggga |
28607548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Complemental strand, 2274 - 2228
Alignment:
| Q |
255 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactc |
301 |
Q |
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|||||||||||||||||||||| || ||||||||||| |||||||| |
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| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactc |
2228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 301
Target Start/End: Original strand, 24379927 - 24379973
Alignment:
| Q |
255 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactc |
301 |
Q |
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| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactc |
24379973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 243
Target Start/End: Complemental strand, 12935084 - 12935055
Alignment:
| Q |
214 |
ccaacaattctccccctccagccaaaggga |
243 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12935084 |
ccaacaattctccccctccagccaaaggga |
12935055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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