View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1927_low_17 (Length: 285)
Name: NF1927_low_17
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_17 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 33811260 - 33811001
Alignment:
| Q |
1 |
cttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtca |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33811260 |
cttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtca |
33811161 |
T |
|
| Q |
101 |
ttggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811160 |
ttggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcg |
33811061 |
T |
|
| Q |
201 |
aattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
260 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33811060 |
aattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgat |
33811001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 33816178 - 33815919
Alignment:
| Q |
1 |
cttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33816178 |
cttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtca |
33816079 |
T |
|
| Q |
101 |
ttggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816078 |
ttggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcg |
33815979 |
T |
|
| Q |
201 |
aattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
260 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33815978 |
aattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttcttgat |
33815919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 4836208 - 4836462
Alignment:
| Q |
6 |
attagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggt |
105 |
Q |
| |
|
||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||| ||||| | ||||| |||||| |||||||| || ||||| || |
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| T |
4836208 |
attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcggtagcggttttgtcatcatgtctgctccattctcatttgt |
4836307 |
T |
|
| Q |
106 |
gtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4836308 |
gtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattc |
4836407 |
T |
|
| Q |
206 |
ttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
260 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4836408 |
ttgctgaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
4836462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 5 - 183
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
5 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattgg |
104 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||| ||||| ||||| |||||| || ||||| || | ||||| |
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| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
105 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
183 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 5 - 259
Target Start/End: Original strand, 54967873 - 54968127
Alignment:
| Q |
5 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattgg |
104 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
105 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
204 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||| || || |
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| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
205 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttga |
259 |
Q |
| |
|
|||||| || |||||||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttcttga |
54968127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 5 - 260
Target Start/End: Complemental strand, 2274 - 2019
Alignment:
| Q |
5 |
gattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattgg |
104 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||||||||| ||| | |||||| |||||||| || ||||||| |
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|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
105 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaatt |
204 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || ||||| || || |
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|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
205 |
cttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
260 |
Q |
| |
|
|||||| || ||||| || |||||||| || |||||||||||||| |||||||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttcttgat |
2019 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 260
Target Start/End: Original strand, 22981829 - 22982057
Alignment:
| Q |
32 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
131 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| ||||| |||||| |||||||| || ||||||||||||| |||||||| || || || || |
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|
| T |
22981829 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
22981928 |
T |
|
| Q |
132 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
231 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
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|
| T |
22981929 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
22982028 |
T |
|
| Q |
232 |
atcacaatagagaacataactttcttgat |
260 |
Q |
| |
|
|| |||||||||||||| |||| ||||| |
|
|
| T |
22982029 |
gtcgcaatagagaacatagcttttttgat |
22982057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 32 - 260
Target Start/End: Complemental strand, 23806579 - 23806351
Alignment:
| Q |
32 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgccatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
131 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| ||||| |||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
23806579 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
23806480 |
T |
|
| Q |
132 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgact |
231 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||||||| |||||||| || ||||| ||||| ||||| |
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|
| T |
23806479 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
23806380 |
T |
|
| Q |
232 |
atcacaatagagaacataactttcttgat |
260 |
Q |
| |
|
|| |||||||||||||| |||| ||||| |
|
|
| T |
23806379 |
gtcgcaatagagaacatagcttttttgat |
23806351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 198
Target Start/End: Original strand, 1105112 - 1105201
Alignment:
| Q |
109 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgt |
198 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| |||||||||| |
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|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatgt |
1105201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 1105025 - 1105101
Alignment:
| Q |
1 |
cttagattagtttggggttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttg |
77 |
Q |
| |
|
||||||||| |||||| |||||| || ||||||| | |||| |||| |||| ||||| ||||||||||||||||| |
|
|
| T |
1105025 |
cttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttttggtagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 161 - 260
Target Start/End: Original strand, 25003630 - 25003727
Alignment:
| Q |
161 |
tacctcacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctaaggtgaattgcactttgactatcacaatagagaacataactttcttgat |
260 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||||||| || || || |||||||||||||||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
25003630 |
tacctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataactttgttgat |
25003727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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