View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_18 (Length: 285)
Name: NF1927_low_18
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33811236 - 33811491
Alignment:
| Q |
1 |
ggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaattgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33811236 |
ggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaatggga |
33811335 |
T |
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| Q |
101 |
aatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagcaacaaattgacaaacttggcaattggta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33811336 |
aatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaattgacaaacttggcaattggta |
33811435 |
T |
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| Q |
201 |
actattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811436 |
actattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33811491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 33816154 - 33816409
Alignment:
| Q |
1 |
ggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaattgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
33816154 |
ggcagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttggtttccagccacaatagtaacaataatgcatcaatggga |
33816253 |
T |
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| Q |
101 |
aatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagcaacaaattgacaaacttggcaattggta |
200 |
Q |
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| T |
33816254 |
aatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaaattctaccatgtcagtaacaaattgacaaacttggcaattggta |
33816353 |
T |
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| Q |
201 |
actattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
256 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816354 |
actattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33816409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 57 - 256
Target Start/End: Original strand, 33807638 - 33807837
Alignment:
| Q |
57 |
tgttggtttccagccacaatagtaacaataatgcatcaattggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
156 |
Q |
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| T |
33807638 |
tgttggtttccagccacaatagtaacaataatgcatcaatgggaaatgttgaatttttctccactagcatgcctatgaataatagcttgcggtggtaaaa |
33807737 |
T |
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| Q |
157 |
attctaccatgtcagcaacaaattgacaaacttggcaattggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
256 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33807738 |
attctaccatgtcagtaacaaattgacaaacttggcaatgggtaactattgtcaaagatggtgcagcaaggattggaaaataagaaccaagcatttaatg |
33807837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 25003511 - 25003452
Alignment:
| Q |
3 |
cagcaaccccaaactaatctaaggatagtttccctttggctggagggggagaattgttgg |
62 |
Q |
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|||||||||||||||||| | | |||| ||||||||||||||||||| |||||||||||| |
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| T |
25003511 |
cagcaaccccaaactaatttgaagatattttccctttggctggagggagagaattgttgg |
25003452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 63
Target Start/End: Original strand, 14178325 - 14178355
Alignment:
| Q |
33 |
tccctttggctggagggggagaattgttggt |
63 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
14178325 |
tccctttggctggagggggagaattgttggt |
14178355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 28607548 - 28607519
Alignment:
| Q |
33 |
tccctttggctggagggggagaattgttgg |
62 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
28607548 |
tccctttggctggagggggagaattgttgg |
28607519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 62
Target Start/End: Original strand, 12935055 - 12935084
Alignment:
| Q |
33 |
tccctttggctggagggggagaattgttgg |
62 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
12935055 |
tccctttggctggagggggagaattgttgg |
12935084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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