View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1927_low_2 (Length: 567)
Name: NF1927_low_2
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 30 - 563
Target Start/End: Original strand, 19081774 - 19082303
Alignment:
| Q |
30 |
ttatggtgctatgtacttccaaacattccagattgatgagtactatgcatgccatgaccttgtacctcaaaagagtagaattaaatataagttaaaaagt |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19081774 |
ttatggtgctatgtacttccaaacattccagattgatgagtactatgcatgccatgaccttgtacctcaaaagagtagaattaaatataagttaaaaagt |
19081873 |
T |
|
| Q |
130 |
tattcaaagaaacatacagagaaacttttagcagccatgtctataagtttaagagcttgtacctaacgcataaagtttaagactaagttaaaaataagct |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19081874 |
tattcaaagaaacatacagagaaacttttagcagccatgtctgtaagtttaagagcttgtacctaacgcataaagtttaagactaagttaaaaa-aagct |
19081972 |
T |
|
| Q |
230 |
tatgtgacataaagttttagggatgtggctatatagtcaacaggtgtatcaagattatttagtctttttgggtttctctatcctatacaatatgacatag |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |
|
|
| T |
19081973 |
tatgtgacataaagttttagggatgtggctatatagtcaacaggtgtatcaagattatttagtctttttgagtttctctatctaataca--atgacatag |
19082070 |
T |
|
| Q |
330 |
gataagacaactaaaaatggttnnnnnnntgtagctcaacaattaattactataagttatgtttcaacaaattatggtcaagactacgtttcaaccacca |
429 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
19082071 |
gataagacaactaaaaatggttaaaaaaatgtaaatcaacaattaattactataaattatgtttcaacaaattat-gtcaagactacgtttcaaccacca |
19082169 |
T |
|
| Q |
430 |
tcattttcatttccttgctttttcatcttttcaaaccattgctctcaattgtattactaattctatcactcgtccaatttgggaaactaataatgatttt |
529 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19082170 |
tcattttcatttccttgttttttcatcttttcaaaccattgctctcaattgtattactaaatcaatcactcgtccagtttgggaaactaataatgatttt |
19082269 |
T |
|
| Q |
530 |
caacgtactcaaccataatttgttcttttctctc |
563 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |
|
|
| T |
19082270 |
caacgtactcaaccataatttgttcgtttctctc |
19082303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 14971406 - 14971449
Alignment:
| Q |
298 |
tgggtttctctatcctatacaatatgacataggataagacaact |
341 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
14971406 |
tgggtttgtctatcctatacaatattacataggttaagacaact |
14971449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University