View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_21 (Length: 278)
Name: NF1927_low_21
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6861697 - 6861945
Alignment:
| Q |
1 |
ctgattttaatgcagcatattctttagccatattctttacactaccagtacatgccttttcatctctattaaaataagtgatccatacgaacaatttgaa |
100 |
Q |
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| T |
6861697 |
ctgattttaatgcagcatattctttagccatattctttacactaccagtacatgccttttaatctctattaaaataagtgatccatacgaacaatttgaa |
6861796 |
T |
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| Q |
101 |
atttctaatattttttcatgtctgattttaatgcagcatattctatagccatgaatttcttgaaggataaagagaaagaaaattgtggccaagaatgtta |
200 |
Q |
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| T |
6861797 |
atttctaatattttttcatgtctgattttaatgcagcatattctatagccatgaatttcttgaaggataaagagaaagaaaattgtggccaagaatgtta |
6861896 |
T |
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| Q |
201 |
ttacctgaatccatatggtgatttatcttgaaaaattggttaagcaaac |
249 |
Q |
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| T |
6861897 |
ttacctgaatccatatggtgatttatcttgaagaattggttaagcaaac |
6861945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 152
Target Start/End: Original strand, 6861679 - 6861727
Alignment:
| Q |
104 |
tctaatattttttcatgtctgattttaatgcagcatattctatagccat |
152 |
Q |
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| T |
6861679 |
tctaatatttttttctgtctgattttaatgcagcatattctttagccat |
6861727 |
T |
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