View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_22 (Length: 260)
Name: NF1927_low_22
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 5182237 - 5181992
Alignment:
| Q |
5 |
cacggtattgaaaatttgagttggactaattcaactttacaaaatcaactgtggagagtgccctcacttatacaaacacatttttaggccatatttcatc |
104 |
Q |
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| T |
5182237 |
cacggtattgaaaatttgagttggactaattcaactttacaaaatcaactgtggagagtgtcctgacttatacaaagatatttttaggccatatttcatc |
5182138 |
T |
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| Q |
105 |
cattgccttttgaaatatcatttgttgctggaaaacttggccacttattagtctgtcccattgatgcataccttaaagccgtaatgcataatcttatatt |
204 |
Q |
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| T |
5182137 |
cattggcttttgaaatatcatttgttgctggaaaacttggccacttattagtctatcccattgatgcataccttaaagccgtaatgcataatcttatgtt |
5182038 |
T |
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| Q |
205 |
catcaaaactgagtccatgtcaaggattgttcttcggtgcttcatct |
251 |
Q |
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||||||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
5182037 |
catcaaaac-gagtccatgtcaaggattattctttggtgcttcatct |
5181992 |
T |
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