View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_24 (Length: 251)
Name: NF1927_low_24
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 108 - 209
Target Start/End: Original strand, 3380499 - 3380600
Alignment:
| Q |
108 |
ttttttgcattatggtgttgtatattttctcatgggttgcgaatctcctttgaacatttgttttgttttcactagaaatatttcattaaattgttgaatt |
207 |
Q |
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| T |
3380499 |
ttttttgtattatgttgttgtatattttcctatgggttgcttatctcctttgaacatttgttttgtttttaccagaaatattttattaaattgttgaatt |
3380598 |
T |
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| Q |
208 |
tt |
209 |
Q |
| |
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|| |
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| T |
3380599 |
tt |
3380600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 98
Target Start/End: Original strand, 3380140 - 3380195
Alignment:
| Q |
43 |
ttcatcaaaatatctgttttatactgctatttttctataggttgctaatcgctttt |
98 |
Q |
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| T |
3380140 |
ttcatcaaaatctttgttttataatgctatttttctatgggttgctaatcactttt |
3380195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 3380081 - 3380124
Alignment:
| Q |
4 |
caagaacaaatatttcgctatattctttcccagtttgctttcat |
47 |
Q |
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| T |
3380081 |
caagaacaaatattttgccatactctttcccagtttgctttcat |
3380124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 41799918 - 41799998
Alignment:
| Q |
142 |
ggttgcgaatctcctttgaacatttgttttgttttcactagaaatatttcattaaattgttgaattttcaatgtcgcaaga |
222 |
Q |
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| T |
41799918 |
ggttgctaatcgcttttgatcatttgtcttgttttcactagaaatatttcattaaattgttgaattttcaatgtcgcaaga |
41799998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41798650 - 41798693
Alignment:
| Q |
1 |
tttcaagaacaaatatttcgctatattctttcccagtttgcttt |
44 |
Q |
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| T |
41798650 |
tttcaagaacaaatatttcgctatattctttcccagtttgcttt |
41798693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 10595468 - 10595421
Alignment:
| Q |
155 |
ctttgaacatttgttttgttttcactagaaatatttcattaaattgtt |
202 |
Q |
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| T |
10595468 |
ctttgaacatttgttttgtttttaccagaaatatttcattaaattgtt |
10595421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 38138067 - 38138121
Alignment:
| Q |
155 |
ctttgaacatttgttttgttttcactagaaatatttcattaaattgttgaatttt |
209 |
Q |
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|||||||||||||||||||||| || ||||||||||||||||||| |||| |||| |
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| T |
38138067 |
ctttgaacatttgttttgttttaacaagaaatatttcattaaatttttgattttt |
38138121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 108
Target Start/End: Original strand, 41799907 - 41799944
Alignment:
| Q |
71 |
atttttctataggttgctaatcgcttttgatcatttgt |
108 |
Q |
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| T |
41799907 |
atttttctataggttgctaatcgcttttgatcatttgt |
41799944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 41798714 - 41798747
Alignment:
| Q |
43 |
ttcatcaaaatatctgttttatactgctattttt |
76 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
41798714 |
ttcatcaaaatatctgttttatactgctattttt |
41798747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 2941802 - 2941842
Alignment:
| Q |
160 |
aacatttgttttgttttcactagaaatatttcattaaattg |
200 |
Q |
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| T |
2941802 |
aacatttgttttgtttttaccagaaatatttcattaaattg |
2941842 |
T |
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