View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_3 (Length: 457)
Name: NF1927_low_3
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 75 - 329
Target Start/End: Complemental strand, 24370175 - 24369920
Alignment:
| Q |
75 |
atgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttagaag |
174 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
24370175 |
atgagaattgtgaaaaatggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattcattgatgaagttcttttagtag |
24370076 |
T |
|
| Q |
175 |
tcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaacc-aacctcgaactttcttat |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
24370075 |
tcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactcttgaaaagaaaatcaagaaaccaaaccaaaccttgaactttcttat |
24369976 |
T |
|
| Q |
274 |
gtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat |
329 |
Q |
| |
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||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||| |
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| T |
24369975 |
gtggtcgagaagaaacaaaaggtgatctttgtctagccttcttccgattaagccat |
24369920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 30 - 233
Target Start/End: Complemental strand, 24358902 - 24358699
Alignment:
| Q |
30 |
gtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgag |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| |
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| T |
24358902 |
gtttttcaacttaccagctgactatctgctatatggttaggttttatgagaattgtgaaaaaaggattgtttgagatgaaattttgagctactttctgag |
24358803 |
T |
|
| Q |
130 |
ctctaacatcctttggccaattgattgatgaagttcttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaacatcgaagaaactct |
229 |
Q |
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| T |
24358802 |
ctctaacatcctttggccaatttattgatgaagttcttttagtagtcttctcatcatcacctgcatatatgcgtgcaatgtaaatcaaagaagaaactct |
24358703 |
T |
|
| Q |
230 |
tgaa |
233 |
Q |
| |
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|||| |
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| T |
24358702 |
tgaa |
24358699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 72 - 212
Target Start/End: Original strand, 24364401 - 24364541
Alignment:
| Q |
72 |
tttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttcttttag |
171 |
Q |
| |
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|||||||||| ||| || ||||||||||||||||||||||||||||| ||||||||||||||| ||| ||| ||||| || ||||||||||||||||||| |
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| T |
24364401 |
tttatgagaactgtaaagaaaggattgcatgagatgaaattttgagctacttcctgagctctagcattcttcggccagtttattgatgaagttcttttag |
24364500 |
T |
|
| Q |
172 |
aagtcttctcatcatcacctgcatatatgtgtgaaatgtaa |
212 |
Q |
| |
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||||||||||| ||| |||||||||||||||| ||||||| |
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| T |
24364501 |
tagtcttctcatgatctcctgcatatatgtgtgcaatgtaa |
24364541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 329
Target Start/End: Complemental strand, 24358664 - 24358564
Alignment:
| Q |
230 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca |
328 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| |
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| T |
24358664 |
tgaaaagaaaatcaagaaaccaaaccaaacctcgaacttttttatgtggtcgaggagaaacgaaaggtgatctttgtttagccttcttccaattaagcca |
24358565 |
T |
|
| Q |
329 |
t |
329 |
Q |
| |
|
| |
|
|
| T |
24358564 |
t |
24358564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 230 - 329
Target Start/End: Original strand, 24364627 - 24364727
Alignment:
| Q |
230 |
tgaaaagaaaatcaagaaaccaaaccaa-cctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagcca |
328 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
24364627 |
tgaaaagaaaatcaagaaaccaaaccaaacctcgaactttcttatgtggtcgagtagaaataaaaggtgatctttgtctagccttcttccgattaagcca |
24364726 |
T |
|
| Q |
329 |
t |
329 |
Q |
| |
|
| |
|
|
| T |
24364727 |
t |
24364727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 24355762 - 24355617
Alignment:
| Q |
66 |
ttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcct-ttggccaattgattgatgaagtt |
164 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||| |||||||||| |
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| T |
24355762 |
ttaggcttgatgagaattgtgaaaaaaggattgcatgagatgaaattttgagctacttcctgagctctagc-tcctcttggccaa-----tgatgaagtt |
24355669 |
T |
|
| Q |
165 |
cttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca |
216 |
Q |
| |
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||||||| ||| |||| | ||||||||||||||||||| ||| ||||||| |
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| T |
24355668 |
cttttagcagttttcttaatctcacctgcatatatgtgtggaatataaaaca |
24355617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 24362629 - 24362479
Alignment:
| Q |
66 |
ttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattgattgatgaagttc |
165 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||| ||| ||| ||||| |||||||| | || | |||||||| | ||||| ||||| |
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| T |
24362629 |
ttaggctttatgagaattgtgaaaaaaggattgcttgagatgaattttgcagctacttctcgagctctagctcccataggccaattcaatgatgtagttc |
24362530 |
T |
|
| Q |
166 |
ttttagaagtcttctcatcatcacctgcatatatgtgtgaaatgtaaaaca |
216 |
Q |
| |
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||| || |||||||| | ||||||||||||||||||||||| ||||||| |
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|
| T |
24362529 |
tttcagtagtcttcttaatctcacctgcatatatgtgtgaaatataaaaca |
24362479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 257 - 329
Target Start/End: Complemental strand, 24354974 - 24354902
Alignment:
| Q |
257 |
acctcgaactttcttatgtggtcgaggagaaacgaaaggcgatctttgtctagccttcttccgattaagccat |
329 |
Q |
| |
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||||| |||||||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |
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| T |
24354974 |
acctctaactttcttatgaggtcgaggagaaacgaaaggtgatctttgtctagcattcttctgattaagccat |
24354902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 54 - 168
Target Start/End: Complemental strand, 24346672 - 24346558
Alignment:
| Q |
54 |
tctgctatatggttaggttttatgagaattgtgaaaaaaggattgcatgagatgaaattttgagcaacttcctgagctctaacatcctttggccaattga |
153 |
Q |
| |
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||||||| ||| |||| ||||||||||||||||||||||||||| ||||||||| ||| ||| ||||||||||||||| | ||||||||||||| |
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| T |
24346672 |
tctgctagatgagtagggtttatgagaattgtgaaaaaaggattggttgagatgaattttaaagctacttcctgagctctagctccctttggccaattcc |
24346573 |
T |
|
| Q |
154 |
ttgatgaagttcttt |
168 |
Q |
| |
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||||| |||||||| |
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|
| T |
24346572 |
atgatgtagttcttt |
24346558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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