View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_4 (Length: 457)
Name: NF1927_low_4
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 30 - 380
Target Start/End: Complemental strand, 527063 - 526711
Alignment:
| Q |
30 |
cttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggagtattaaacatgttgcttgtttctttgttactcttataacc |
129 |
Q |
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| T |
527063 |
cttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggagtattaaacatgttgcttgtttctttgttactcttataacc |
526964 |
T |
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| Q |
130 |
tgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtagaagaggtaaa--atatcaattaatgtatttgacagtcacag |
227 |
Q |
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| T |
526963 |
tgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtagaagaggtaaaatatatcaattaatgtatttgacagtcacag |
526864 |
T |
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| Q |
228 |
ttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtactaacaatgttnnnnnnntaagaataaaatattcattctatg |
327 |
Q |
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| T |
526863 |
ttacggtcacttaattggaaaagttaatgactatgcaggacagtaactcagtaaggtactaacaatgttcaaaaaataagaataaaatattcattctatg |
526764 |
T |
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| Q |
328 |
attatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
380 |
Q |
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| T |
526763 |
attatcaatttaatctatcattgagttgagtcaactagaaacagacgtagaac |
526711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 416 - 448
Target Start/End: Complemental strand, 526675 - 526643
Alignment:
| Q |
416 |
gttcagcttcaagtttaatcatcgtagaataat |
448 |
Q |
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| T |
526675 |
gttcatcttcaagtttaatcatcgtagaataat |
526643 |
T |
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