View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1927_low_5 (Length: 449)
Name: NF1927_low_5
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 98 - 437
Target Start/End: Original strand, 29071206 - 29071545
Alignment:
| Q |
98 |
gattatcatttaaaagtttgagttttctcctttaaaaatcaccagaggagctaaaaccttaaatatgagtcatatatcaaatttatttactttcttatgt |
197 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29071206 |
gattatcatttaaaagtttgaattttctcctttaaaaatcaccagaggagctaaaaccttaaatatgagtcatatatcaaatttatttactttcttatgt |
29071305 |
T |
|
| Q |
198 |
caaatattatggtcacctcacttacgttaaaatttgcaatagaaaaattgttgtcgttttccccttcttttgtcaatgaccttttggttggggcattatc |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29071306 |
caaatattatggtcacctcacttacgttaaaatttgcaatagaaaaattgttgtcgttttccccttcttttgtcaatgaccttttggttggggcattatc |
29071405 |
T |
|
| Q |
298 |
aagagcaaaataattaagatcagaaacaaaaacaatagagcaagtaagtattgataccattttttccatgcacatgcaacctgatcaggtccacataatt |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29071406 |
aagagcaaaataattaagatcagaaacaaaaacaatagagcaagtaagtattggtaccattttttccatgcacatgcaacctgatcaggtccacataatt |
29071505 |
T |
|
| Q |
398 |
aagacgtgacctagaattctacaaacgataccatgtgtct |
437 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29071506 |
aagacgtgacctagaattctacaaacgataccatgtgtct |
29071545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University