View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1927_low_6 (Length: 427)
Name: NF1927_low_6
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1927_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 37540620 - 37540990
Alignment:
| Q |
17 |
cacaatcagaaagttgcaaaataatagcaaacctgtcattcaatttatcccttcgcactttctcacgacctgccttggagctagatgcatatgattctgt |
116 |
Q |
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| T |
37540620 |
cacaatcagaaagttgcaaaataatagcaaacctgtcattcaatttatcccttcgcactttctcacgacctgccttggagctagatgcatatgattctgt |
37540719 |
T |
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| Q |
117 |
ccttaacctaaagtaacagttgcatattattcgtttagcttatttctttttctagtagatgtgagattaaccactcggttgaattccaatagtatataat |
216 |
Q |
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| T |
37540720 |
ccttaacctaaagtaacagttgcatattattcgtttagcttatttctttttctagtagatgtgagattaaccactcggttgaattccaatagtatataat |
37540819 |
T |
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| Q |
217 |
atcttttacaaaggcaaagaagatatattaccgctttgaagggccgttttccagtactgttgaatccagtgagtattccatttccatgctgcaaacataa |
316 |
Q |
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| T |
37540820 |
atcttttacaaaggcaaagaagatatattaccgctttgaagggccgttttccagtactgttgaatccagtgagtattccatttccatgctgcaaatataa |
37540919 |
T |
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| Q |
317 |
agtaatcatcatgagaaagttgagaatagtcaaccacagagagtgtatgtttggttccacttttggagtat |
387 |
Q |
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| T |
37540920 |
agtaatcatcatgagaaagttgagaatagtcaaccacagagagtgtatgtttggttccacttctggagtat |
37540990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 37541180 - 37541273
Alignment:
| Q |
237 |
agatatattaccgctttgaagggccgttttccagtactgttgaatccagtgagtattccatttccatgctgcaaacataaagtaatcatcatga |
330 |
Q |
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| T |
37541180 |
agatatattaccgctttgaagggttactttccattacagttgaatccagggagtaatccatttccaagctgcaaatataaagtaataatcatga |
37541273 |
T |
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