View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1927_low_7 (Length: 407)

Name: NF1927_low_7
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1927_low_7
NF1927_low_7
[»] chr5 (11 HSPs)
chr5 (162-208)||(1463940-1463986)
chr5 (162-208)||(20735155-20735201)
chr5 (162-208)||(18303058-18303104)
chr5 (162-206)||(38230185-38230229)
chr5 (166-208)||(37417114-37417156)
chr5 (173-208)||(4674806-4674841)
chr5 (173-208)||(25346253-25346288)
chr5 (178-208)||(36045130-36045160)
chr5 (162-208)||(37304003-37304048)
chr5 (162-207)||(30733190-30733235)
chr5 (175-207)||(36091309-36091341)
[»] chr1 (16 HSPs)
chr1 (162-211)||(47763365-47763414)
chr1 (162-208)||(13870061-13870107)
chr1 (162-208)||(40678892-40678938)
chr1 (164-208)||(17954841-17954885)
chr1 (166-208)||(17350130-17350172)
chr1 (162-208)||(25819254-25819300)
chr1 (163-208)||(19976533-19976578)
chr1 (162-211)||(52833086-52833135)
chr1 (173-208)||(35111718-35111753)
chr1 (162-200)||(2044944-2044982)
chr1 (162-208)||(29106848-29106894)
chr1 (166-208)||(39238785-39238827)
chr1 (173-205)||(19516479-19516511)
chr1 (173-207)||(12675734-12675768)
chr1 (166-208)||(29491539-29491580)
chr1 (176-208)||(38021321-38021353)
[»] chr8 (11 HSPs)
chr8 (162-208)||(2800088-2800134)
chr8 (162-208)||(35253804-35253850)
chr8 (162-208)||(1588836-1588882)
chr8 (162-208)||(10292421-10292467)
chr8 (162-208)||(31129371-31129417)
chr8 (162-208)||(38790552-38790598)
chr8 (162-206)||(18009695-18009739)
chr8 (162-205)||(35301143-35301186)
chr8 (162-208)||(2696602-2696648)
chr8 (174-208)||(10310351-10310385)
chr8 (166-208)||(7314802-7314844)
[»] chr6 (6 HSPs)
chr6 (162-208)||(14981682-14981728)
chr6 (162-208)||(29284187-29284233)
chr6 (162-210)||(24470371-24470419)
chr6 (162-208)||(9064935-9064981)
chr6 (166-208)||(33628925-33628967)
chr6 (162-208)||(11636755-11636801)
[»] chr4 (17 HSPs)
chr4 (162-208)||(8690283-8690329)
chr4 (162-208)||(9693031-9693077)
chr4 (162-208)||(14149862-14149908)
chr4 (162-208)||(28520711-28520757)
chr4 (162-208)||(48968190-48968236)
chr4 (162-208)||(15640423-15640469)
chr4 (162-208)||(52031276-52031322)
chr4 (162-208)||(53815765-53815811)
chr4 (162-208)||(36954206-36954252)
chr4 (162-211)||(5909763-5909812)
chr4 (164-208)||(46799476-46799520)
chr4 (162-204)||(46799569-46799611)
chr4 (162-203)||(27296896-27296937)
chr4 (211-263)||(29269355-29269412)
chr4 (178-206)||(40150544-40150572)
chr4 (165-208)||(42411436-42411480)
chr4 (180-208)||(52330907-52330935)
[»] chr3 (15 HSPs)
chr3 (162-208)||(27183661-27183707)
chr3 (162-206)||(38555008-38555052)
chr3 (162-208)||(9625052-9625098)
chr3 (162-208)||(32453503-32453549)
chr3 (162-208)||(36476428-36476474)
chr3 (162-205)||(52030193-52030236)
chr3 (162-208)||(7448343-7448389)
chr3 (162-208)||(7456485-7456531)
chr3 (162-208)||(10959202-10959248)
chr3 (162-208)||(24559458-24559504)
chr3 (163-205)||(42823966-42824008)
chr3 (163-208)||(14868754-14868799)
chr3 (178-211)||(44671535-44671568)
chr3 (165-208)||(24136733-24136778)
chr3 (165-208)||(45118712-45118756)
[»] chr2 (7 HSPs)
chr2 (162-208)||(43871022-43871068)
chr2 (165-208)||(29035045-29035088)
chr2 (162-208)||(34034419-34034465)
chr2 (162-208)||(2304359-2304405)
chr2 (173-208)||(44187773-44187808)
chr2 (178-208)||(32527073-32527103)
chr2 (173-203)||(36106894-36106924)
[»] scaffold0809 (1 HSPs)
scaffold0809 (165-208)||(4789-4832)
[»] chr7 (8 HSPs)
chr7 (162-205)||(24397017-24397060)
chr7 (163-208)||(31475821-31475866)
chr7 (165-206)||(41139158-41139199)
chr7 (173-208)||(14818356-14818391)
chr7 (173-208)||(15265354-15265389)
chr7 (178-208)||(19126806-19126836)
chr7 (174-208)||(41417267-41417301)
chr7 (162-203)||(47635124-47635164)
[»] scaffold0308 (1 HSPs)
scaffold0308 (162-208)||(7145-7191)
[»] scaffold0227 (1 HSPs)
scaffold0227 (162-208)||(21918-21963)
[»] scaffold0070 (1 HSPs)
scaffold0070 (176-208)||(12634-12666)


Alignment Details
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 1463986 - 1463940
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  1463986 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 1463940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 20735155 - 20735201
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  20735155 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 20735201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 18303058 - 18303104
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  18303058 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 18303104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 38230185 - 38230229
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtg 206  Q
    |||||||| | ||||||||||||||||||||||||||||||||||    
T  38230185 caggtagcatagtggctagaaattcacttttaaagtgaataagtg 38230229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 37417114 - 37417156
Alignment:
Q  166 tagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| ||||||||||||||||||||||||||| ||||||||    
T  37417114 tagcctagtggctagaaattcacttttaaagtgagtaagtggg 37417156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 4674806 - 4674841
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||| |||||||||||||||||||||||||||||||    
T  4674806 gtggttagaaattcacttttaaagtgaataagtggg 4674841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 25346288 - 25346253
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||| |||||    
T  25346288 gtggctagaaattcacttttaaagtgaatacgtggg 25346253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 36045130 - 36045160
Alignment:
Q  178 tagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||||    
T  36045130 tagaaattcacttttaaagtgaataagtggg 36045160  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 37304048 - 37304003
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  37304048 caggtagcctagtggctataaattca-ttttaaagtgaataagtggg 37304003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 30733235 - 30733190
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtgg 207  Q
    |||||||||| ||||||||||||| | |||| ||||||||||||||    
T  30733235 caggtagcctagtggctagaaatttatttttcaagtgaataagtgg 30733190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 36091309 - 36091341
Alignment:
Q  175 ggctagaaattcacttttaaagtgaataagtgg 207  Q
    |||||||||| ||||||||||||||||||||||    
T  36091309 ggctagaaatgcacttttaaagtgaataagtgg 36091341  T

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Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 47763365 - 47763414
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggatg 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  47763365 caggtagcctagtggctagaaattcacttttaaagtgaataagtgggatg 47763414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 13870061 - 13870107
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  13870061 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 13870107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 40678938 - 40678892
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  40678938 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 40678892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 164 - 208
Target Start/End: Original strand, 17954841 - 17954885
Alignment:
Q  164 ggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  17954841 ggtagcctagtggctagaaattcacttttaaagtgaataagtggg 17954885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 17350172 - 17350130
Alignment:
Q  166 tagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  17350172 tagcctagtggctagaaattcacttttaaagtgaataagtggg 17350130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 25819300 - 25819254
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  25819300 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 25819254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 19976533 - 19976578
Alignment:
Q  163 aggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||    
T  19976533 aggtagcctagtggctagaaattcacttttaaagtgaatatgtggg 19976578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 52833086 - 52833135
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggatg 211  Q
    |||||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  52833086 caggtagcctagtgtctagaaattcacttttaaagtgaataaatgggatg 52833135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 35111753 - 35111718
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||||||||||||||||||||||||||||||||    
T  35111753 gtggctagaaattcacttttaaagtgaataagtggg 35111718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 200
Target Start/End: Original strand, 2044944 - 2044982
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaa 200  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2044944 caggtagcctagtggctagaaattcacttttaaagtgaa 2044982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 29106848 - 29106894
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| |||||||||||||||||||||||| |||||||||| ||||    
T  29106848 caggtaacctggtggctagaaattcacttttcaagtgaataaatggg 29106894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 39238827 - 39238785
Alignment:
Q  166 tagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  39238827 tagcctagcggctagaaattcacttttaaagtgaataagtggg 39238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 19516479 - 19516511
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagt 205  Q
    |||||||||||||||||||||||||||||||||    
T  19516479 gtggctagaaattcacttttaaagtgaataagt 19516511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 12675734 - 12675768
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtgg 207  Q
    |||| ||||||||||||||||||||||||||||||    
T  12675734 gtggttagaaattcacttttaaagtgaataagtgg 12675768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 29491580 - 29491539
Alignment:
Q  166 tagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| |||||||||||||||| |||||||||||||||||||    
T  29491580 tagcctagtggctagaaattcac-tttaaagtgaataagtggg 29491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 38021353 - 38021321
Alignment:
Q  176 gctagaaattcacttttaaagtgaataagtggg 208  Q
    |||| ||||||||||||||||||||||||||||    
T  38021353 gctaaaaattcacttttaaagtgaataagtggg 38021321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 2800134 - 2800088
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  2800134 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 2800088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 35253804 - 35253850
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  35253804 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 35253850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 1588882 - 1588836
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||    
T  1588882 caggtagcatagtggctagaaattcacttttaaagtgaataagtggg 1588836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 10292467 - 10292421
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  10292467 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 10292421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 31129417 - 31129371
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||| ||||||||||||||||||||||||||||    
T  31129417 caggtagcctagtggctaaaaattcacttttaaagtgaataagtggg 31129371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 38790552 - 38790598
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  38790552 caggtagcctagtgcctagaaattcacttttaaagtgaataagtggg 38790598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 18009695 - 18009739
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtg 206  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  18009695 caggtagcctaatggctagaaattcacttttaaagtgaataagtg 18009739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 205
Target Start/End: Original strand, 35301143 - 35301186
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagt 205  Q
    ||||||| || |||||||||||||||||||||||||||||||||    
T  35301143 caggtagtctagtggctagaaattcacttttaaagtgaataagt 35301186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 2696648 - 2696602
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||    
T  2696648 caggtagcctagtggtcagaaattcacttttaaagtgaataagtggg 2696602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 10310385 - 10310351
Alignment:
Q  174 tggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||||||||    
T  10310385 tggctagaaattcacttttaaagtgaataagtggg 10310351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 7314844 - 7314802
Alignment:
Q  166 tagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| ||| |||| |||||||||||||||||||||||||||    
T  7314844 tagcctagtgactaggaattcacttttaaagtgaataagtggg 7314802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 14981682 - 14981728
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14981682 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 14981728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 29284233 - 29284187
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  29284233 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 29284187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 24470371 - 24470419
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggat 210  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  24470371 caggtagcctattggctagaaattcacttttaaagtgaataagtgggat 24470419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 9064981 - 9064935
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||    
T  9064981 caggtagcctagtggctagaaattcacttttaaagtaaataagtggg 9064935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 33628925 - 33628967
Alignment:
Q  166 tagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  33628925 tagcctagtggctagaaattcacttttaaagtgaataagtggg 33628967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 11636801 - 11636755
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| |||| |||||||||||||||||| |||| |||||||    
T  11636801 caggtagcctagtggttagaaattcacttttaaaatgaaaaagtggg 11636755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 8690329 - 8690283
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  8690329 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 8690283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 9693077 - 9693031
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  9693077 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 9693031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 14149908 - 14149862
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  14149908 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 14149862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 28520711 - 28520757
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  28520711 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 28520757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 48968190 - 48968236
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  48968190 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 48968236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 15640423 - 15640469
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  15640423 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 15640469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 52031322 - 52031276
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||    
T  52031322 caggtagcatagtggctagaaattcacttttaaagtgaataagtggg 52031276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 53815811 - 53815765
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||| ||||||||||||||    
T  53815811 caggtagcctagtggctagaaattcacttttatagtgaataagtggg 53815765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 36954252 - 36954206
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| || |||||||||||||||||||||||||||| ||||    
T  36954252 caggtagcctagtagctagaaattcacttttaaagtgaataaatggg 36954206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 162 - 211
Target Start/End: Original strand, 5909763 - 5909812
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtgggatg 211  Q
    |||||||| | |||| |||||||||| |||||||||||||||||||||||    
T  5909763 caggtagcttagtggttagaaattcatttttaaagtgaataagtgggatg 5909812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 46799520 - 46799476
Alignment:
Q  164 ggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||| || ||||||||||||||||||||||||||||||| ||||    
T  46799520 ggtagtctagtggctagaaattcacttttaaagtgaataaatggg 46799476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 46799611 - 46799569
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataag 204  Q
    ||||||| || |||| |||||||||||||||||||||||||||    
T  46799611 caggtagtctagtggttagaaattcacttttaaagtgaataag 46799569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 27296937 - 27296896
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataa 203  Q
    ||||||| || ||||||||||||| |||||||||||||||||    
T  27296937 caggtagtctagtggctagaaatttacttttaaagtgaataa 27296896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 29269355 - 29269412
Alignment:
Q  211 gaatcccggcccctacatatagtaatgcattgt-----aactgagctatgctcacggg 263  Q
    ||||||| ||||||||||||| |||||||||||     ||||||||||||||||||||    
T  29269355 gaatcccagcccctacatataataatgcattgtccaccaactgagctatgctcacggg 29269412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 206
Target Start/End: Complemental strand, 40150572 - 40150544
Alignment:
Q  178 tagaaattcacttttaaagtgaataagtg 206  Q
    |||||||||||||||||||||||||||||    
T  40150572 tagaaattcacttttaaagtgaataagtg 40150544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 42411436 - 42411480
Alignment:
Q  165 gtagcctggtggctagaaattcac-ttttaaagtgaataagtggg 208  Q
    ||||||| |||||||||||||||| ||||||||| ||||||||||    
T  42411436 gtagcctagtggctagaaattcactttttaaagtaaataagtggg 42411480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 180 - 208
Target Start/End: Original strand, 52330907 - 52330935
Alignment:
Q  180 gaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||    
T  52330907 gaaattcacttttaaagtgaataagtggg 52330935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 27183661 - 27183707
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  27183661 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 27183707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 38555008 - 38555052
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtg 206  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  38555008 caggtagtctggtggctagaaattcacttttaaagtgaataagtg 38555052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 9625098 - 9625052
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  9625098 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 9625052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 32453503 - 32453549
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||    
T  32453503 caggtagcctagtgactagaaattcacttttaaagtgaataagtggg 32453549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 36476474 - 36476428
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||    
T  36476474 caggtagcctagtggctaggaattcacttttaaagtgaataagtggg 36476428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 52030236 - 52030193
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagt 205  Q
    |||||||||| ||||||| |||||||||||||||||||||||||    
T  52030236 caggtagcctagtggctaaaaattcacttttaaagtgaataagt 52030193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 7448343 - 7448389
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||    
T  7448343 caggtagtctagtggctagaaattcacttttgaagtgaataagtggg 7448389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 7456485 - 7456531
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || |||||||||||||||||||| |||||||||||||||    
T  7456485 caggtagtctagtggctagaaattcacttttgaagtgaataagtggg 7456531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 10959248 - 10959202
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||| ||||||||||||||||||||||||||||||||    
T  10959248 caggtagtctagtgactagaaattcacttttaaagtgaataagtggg 10959202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 24559504 - 24559458
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| ||| |||| |||||||||||||||||||||||||||||||    
T  24559504 caggtaacctagtggttagaaattcacttttaaagtgaataagtggg 24559458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 205
Target Start/End: Original strand, 42823966 - 42824008
Alignment:
Q  163 aggtagcctggtggctagaaattcacttttaaagtgaataagt 205  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  42823966 aggtagtctagtggctagaaattcacttttaaagtgaataagt 42824008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 163 - 208
Target Start/End: Complemental strand, 14868799 - 14868754
Alignment:
Q  163 aggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||| ||| |||||||||| |||||||||||||||||||||||||    
T  14868799 aggtaacctagtggctagaatttcacttttaaagtgaataagtggg 14868754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 178 - 211
Target Start/End: Complemental strand, 44671568 - 44671535
Alignment:
Q  178 tagaaattcacttttaaagtgaataagtgggatg 211  Q
    ||||||||||||||||||||||||||||||||||    
T  44671568 tagaaattcacttttaaagtgaataagtgggatg 44671535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 24136733 - 24136778
Alignment:
Q  165 gtagcctggtggctagaaattcac--ttttaaagtgaataagtggg 208  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||    
T  24136733 gtagcctagtggctagaaattcacctttttaaagtgaataagtggg 24136778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 45118756 - 45118712
Alignment:
Q  165 gtagcctggtggctagaaattca-cttttaaagtgaataagtggg 208  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||    
T  45118756 gtagcctagtggctagaaattcacctcttaaagtgaataagtggg 45118712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 43871068 - 43871022
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  43871068 caggtagcctagtggctagaaattcacttttaaagtgaataagtggg 43871022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 29035088 - 29035045
Alignment:
Q  165 gtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  29035088 gtagcctagtggctagaaattcacttttaaagtgaataagtggg 29035045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 34034465 - 34034419
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||||||||||||||||||||||||    
T  34034465 caggtagtctagtggctagaaattcacttttaaagtgaataagtggg 34034419  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 2304405 - 2304359
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| |||| |||||||||||||||||||| ||||||||||    
T  2304405 caggtagcctagtggttagaaattcacttttaaagtaaataagtggg 2304359  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 173 - 208
Target Start/End: Complemental strand, 44187808 - 44187773
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| ||||||||||||||||||||||||||||    
T  44187808 gtggctaaaaattcacttttaaagtgaataagtggg 44187773  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 208
Target Start/End: Original strand, 32527073 - 32527103
Alignment:
Q  178 tagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||||    
T  32527073 tagaaattcacttttaaagtgaataagtggg 32527103  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 203
Target Start/End: Complemental strand, 36106924 - 36106894
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataa 203  Q
    |||||||||||||||||||||||||||||||    
T  36106924 gtggctagaaattcacttttaaagtgaataa 36106894  T

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Target: scaffold0809 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 4789 - 4832
Alignment:
Q  165 gtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  4789 gtagcctagtggctagaaattcacttttaaagtgaataagtggg 4832  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 24397060 - 24397017
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagt 205  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  24397060 caggtagcctagtggctagaaattcacttttaaagtgaataagt 24397017  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 31475821 - 31475866
Alignment:
Q  163 aggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| || ||||||||||||||||||||||||||||||||||||    
T  31475821 aggtagtctagtggctagaaattcacttttaaagtgaataagtggg 31475866  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 41139199 - 41139158
Alignment:
Q  165 gtagcctggtggctagaaattcacttttaaagtgaataagtg 206  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  41139199 gtagcctagtggctagaaattcacttttaaagtgaataagtg 41139158  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 14818356 - 14818391
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||||||||||||||||||||||||||||||||    
T  14818356 gtggctagaaattcacttttaaagtgaataagtggg 14818391  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 208
Target Start/End: Original strand, 15265354 - 15265389
Alignment:
Q  173 gtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||||||||||||||||||||||||||||||||    
T  15265354 gtggctagaaattcacttttaaagtgaataagtggg 15265389  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 208
Target Start/End: Complemental strand, 19126836 - 19126806
Alignment:
Q  178 tagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||||||    
T  19126836 tagaaattcacttttaaagtgaataagtggg 19126806  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 208
Target Start/End: Original strand, 41417267 - 41417301
Alignment:
Q  174 tggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||| ||||||||||||||||||||||||||||    
T  41417267 tggctaaaaattcacttttaaagtgaataagtggg 41417301  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 47635164 - 47635124
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataa 203  Q
    |||||||||| ||||||||||||||| |||||||||||||||    
T  47635164 caggtagcctagtggctagaaattca-ttttaaagtgaataa 47635124  T

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Target: scaffold0308 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 7191 - 7145
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||||    
T  7191 caggtagcctagtggctagaaattcacttttaaagtgaataaatggg 7145  T

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Target: scaffold0227 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 208
Target Start/End: Complemental strand, 21963 - 21918
Alignment:
Q  162 caggtagcctggtggctagaaattcacttttaaagtgaataagtggg 208  Q
    ||||||| || ||||||||||||||| ||||||||||||||||||||    
T  21963 caggtagtctagtggctagaaattca-ttttaaagtgaataagtggg 21918  T

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Target: scaffold0070 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 12666 - 12634
Alignment:
Q  176 gctagaaattcacttttaaagtgaataagtggg 208  Q
    |||||||||||||||||||||||||||| ||||    
T  12666 gctagaaattcacttttaaagtgaataaatggg 12634  T

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