View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1927_low_9 (Length: 363)

Name: NF1927_low_9
Description: NF1927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1927_low_9
NF1927_low_9
[»] chr3 (3 HSPs)
chr3 (186-335)||(36120831-36120980)
chr3 (124-174)||(36120744-36120794)
chr3 (79-122)||(51981542-51981585)
[»] chr2 (2 HSPs)
chr2 (186-335)||(40566432-40566581)
chr2 (124-174)||(40566345-40566395)
[»] chr1 (6 HSPs)
chr1 (186-335)||(38812282-38812436)
chr1 (124-174)||(38812473-38812523)
chr1 (92-129)||(11333807-11333844)
chr1 (92-129)||(11491827-11491864)
chr1 (79-122)||(28344612-28344655)
chr1 (79-122)||(31655547-31655590)
[»] chr7 (2 HSPs)
chr7 (81-130)||(43002542-43002591)
chr7 (79-122)||(982216-982259)
[»] chr5 (2 HSPs)
chr5 (79-130)||(36960204-36960255)
chr5 (79-130)||(36944207-36944258)
[»] chr4 (4 HSPs)
chr4 (79-132)||(55494401-55494454)
chr4 (79-122)||(53443690-53443733)
chr4 (79-129)||(7140307-7140357)
chr4 (80-129)||(52909729-52909778)
[»] chr8 (1 HSPs)
chr8 (80-128)||(2772303-2772351)
[»] chr6 (1 HSPs)
chr6 (90-130)||(32441657-32441697)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 36120831 - 36120980
Alignment:
Q  186 ttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagggacatgaaaagacgatcctcatgttccgaacatctcac 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36120831 ttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaagacgatcctcatgttccgaacatctcac 36120930  T
Q  286 ttaccggtttgtatggctatgtcaaacccgcagggtccaccctgcaaatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36120931 ttaccggtttgtatggctatgtcaaacccgcagggtccaccctgcaaatt 36120980  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 36120744 - 36120794
Alignment:
Q  124 agctaatctccaaactttaagtctcaagctcctacattcttgcttcagctt 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36120744 agcttatctccaaactttaagtctcaagctcctacattcttgcttcagctt 36120794  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 51981542 - 51981585
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataa 122  Q
    ||||||||||  ||||||||||||||||||||||||||||||||    
T  51981542 taaattaaattatcatgtacttttaggtcattttatatttataa 51981585  T

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Target: chr2 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 186 - 335
Target Start/End: Original strand, 40566432 - 40566581
Alignment:
Q  186 ttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagggacatgaaaagacgatcctcatgttccgaacatctcac 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  40566432 ttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaagacgatcctcatgttccgaacatctcac 40566531  T
Q  286 ttaccggtttgtatggctatgtcaaacccgcagggtccaccctgcaaatt 335  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40566532 ttaccggtttgtatggctatgtcaaacctgcagggtccaccctgcaaatt 40566581  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 40566345 - 40566395
Alignment:
Q  124 agctaatctccaaactttaagtctcaagctcctacattcttgcttcagctt 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  40566345 agcttatctccaaactttaagtctcaagctcctacattcttgcttcagctt 40566395  T

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Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 186 - 335
Target Start/End: Complemental strand, 38812436 - 38812282
Alignment:
Q  186 ttcaaaccaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagggacatgaaaagacgatcctcatgttccgaacatctcac 285  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  38812436 ttcaaactaaatgtttaaaatcagtttctttaagtgctcctaagcctccagggaatcagagtgacatgaaaagactatcctcatgttccgaacatctcac 38812337  T
Q  286 ttaccggtttgtatggc-----tatgtcaaacccgcagggtccaccctgcaaatt 335  Q
    |||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  38812336 ttaccggtttgtatggctcacatatgtcaaacccgcagggtccaccctgcaaatt 38812282  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 38812523 - 38812473
Alignment:
Q  124 agctaatctccaaactttaagtctcaagctcctacattcttgcttcagctt 174  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  38812523 agcttatctccaaactttaagtctcaagctcctacattcttgcttcagctt 38812473  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 11333807 - 11333844
Alignment:
Q  92 catgtacttttaggtcattttatatttataagagctaa 129  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  11333807 catgtacttttaggtcattttatatttataacagctaa 11333844  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 11491827 - 11491864
Alignment:
Q  92 catgtacttttaggtcattttatatttataagagctaa 129  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  11491827 catgtacttttaggtcattttatatttataacagctaa 11491864  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 28344612 - 28344655
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataa 122  Q
    |||||||||| ||||| |||||||| ||||||||||||||||||    
T  28344612 taaattaaattgtcatatacttttaagtcattttatatttataa 28344655  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Complemental strand, 31655590 - 31655547
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataa 122  Q
    ||||| |||| |||||||| ||||||||||||||||||||||||    
T  31655590 taaataaaattgtcatgtaattttaggtcattttatatttataa 31655547  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 43002542 - 43002591
Alignment:
Q  81 aattaaatagtcatgtacttttaggtcattttatatttataagagctaat 130  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43002542 aattaaatagtcatgtacttttaggtcattttatatttataacagctaat 43002591  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 982216 - 982259
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataa 122  Q
    |||||||||| |||||||||||| | ||||||||||||||||||    
T  982216 taaattaaattgtcatgtactttcaagtcattttatatttataa 982259  T

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Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 79 - 130
Target Start/End: Original strand, 36960204 - 36960255
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataagagctaat 130  Q
    |||||||||| ||||||||||||||||||||||||||||||||| |||||||    
T  36960204 taaattaaattgtcatgtacttttaggtcattttatatttataacagctaat 36960255  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 36944258 - 36944207
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataagagctaat 130  Q
    |||||||||| |||||||||||| |||||||||||||||||||| |||||||    
T  36944258 taaattaaattgtcatgtactttgaggtcattttatatttataacagctaat 36944207  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 55494454 - 55494401
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataagagctaatct 132  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | |||||||    
T  55494454 taaattaaattgtcatgtacttttaggtcattttatatttataacaactaatct 55494401  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 122
Target Start/End: Original strand, 53443690 - 53443733
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataa 122  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  53443690 taaattaaatagtcatgtacttttaggtcattttatatatataa 53443733  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 79 - 129
Target Start/End: Complemental strand, 7140357 - 7140307
Alignment:
Q  79 taaattaaatagtcatgtacttttaggtcattttatatttataagagctaa 129  Q
    ||||| |||| |||||||||||||| |||||||||||||||||||||||||    
T  7140357 taaataaaattgtcatgtacttttaagtcattttatatttataagagctaa 7140307  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 52909729 - 52909778
Alignment:
Q  80 aaattaaatagtcatgtacttttaggtcattttatatttataagagctaa 129  Q
    |||||||||  ||||||| |||||| ||||||||||||||||| ||||||    
T  52909729 aaattaaattatcatgtaattttagatcattttatatttataaaagctaa 52909778  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 2772351 - 2772303
Alignment:
Q  80 aaattaaatagtcatgtacttttaggtcattttatatttataagagcta 128  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  2772351 aaattaaattgtcatgtacttttaggtcattttatatttataacagcta 2772303  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 90 - 130
Target Start/End: Complemental strand, 32441697 - 32441657
Alignment:
Q  90 gtcatgtacttttaggtcattttatatttataagagctaat 130  Q
    |||||||| |||||||| |||||||||||||||||| ||||    
T  32441697 gtcatgtatttttaggttattttatatttataagagttaat 32441657  T

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