View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19280_low_3 (Length: 261)

Name: NF19280_low_3
Description: NF19280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19280_low_3
NF19280_low_3
[»] chr4 (3 HSPs)
chr4 (10-246)||(53328607-53328843)
chr4 (12-223)||(22898448-22898659)
chr4 (12-223)||(22950116-22950327)
[»] chr7 (2 HSPs)
chr7 (12-227)||(39954917-39955132)
chr7 (30-160)||(10575300-10575430)
[»] chr5 (1 HSPs)
chr5 (12-246)||(26358601-26358835)
[»] chr2 (1 HSPs)
chr2 (12-246)||(41027467-41027701)
[»] chr3 (7 HSPs)
chr3 (15-226)||(21584670-21584881)
chr3 (63-223)||(24919962-24920122)
chr3 (15-223)||(24923536-24923744)
chr3 (15-223)||(24497335-24497543)
chr3 (12-244)||(24981941-24982173)
chr3 (15-223)||(31825633-31825841)
chr3 (57-223)||(25084978-25085144)
[»] chr8 (1 HSPs)
chr8 (30-163)||(14261168-14261301)


Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 10 - 246
Target Start/End: Original strand, 53328607 - 53328843
Alignment:
Q  10 gcaaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtct 109  Q
    ||||||||||||||||| | |||||||| ||||| ||||||||||||||||| || || ||||||||||| ||||||||||||||||| |||||||||||    
T  53328607 gcaaaggaggaaagggtttaggaaagggtggagcgaaacgacaccgtaaggttctgcgcgataacatccagggaatcacaaagcctgcgattcgtcgtct 53328706  T
Q  110 cgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  53328707 cgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtc 53328806  T
Q  210 acctacacagagcatgctcgccgtaagactgttactg 246  Q
    || ||||||||||||||||||||||||||||||||||    
T  53328807 acatacacagagcatgctcgccgtaagactgttactg 53328843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 22898448 - 22898659
Alignment:
Q  12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| |    
T  22898448 aaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttg 22898547  T
Q  112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |  |  | || || ||||||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||| | ||||| || ||    
T  22898548 ctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgac 22898647  T
Q  212 ctacacagagca 223  Q
     ||||| |||||    
T  22898648 ttacactgagca 22898659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 12 - 223
Target Start/End: Original strand, 22950116 - 22950327
Alignment:
Q  12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||| ||||||||| | |||||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| |    
T  22950116 aaaggtggaaagggtttgggaaagggtggagcaaagcgacatcgtaaggtgcttcgtgacaacatccagggaataacaaagccagcgattcgtcgtcttg 22950215  T
Q  112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |  |  | || || ||||||||||||||||| || || ||||| || || ||||||||  | ||||| ||| | |||||||||||| | ||||| || ||    
T  22950216 ctcgtagaggaggagtgaagcgtatcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgac 22950315  T
Q  212 ctacacagagca 223  Q
     ||||| |||||    
T  22950316 ttacactgagca 22950327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 12 - 227
Target Start/End: Complemental strand, 39955132 - 39954917
Alignment:
Q  12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||||||||||||  | |||||||||||||||||  | ||| | ||||| ||||| || ||||||||||| || || |||||||| ||||||||||| |    
T  39955132 aaaggaggaaagggattgggaaagggaggagcaaagaggcacagaaaggttcttcgcgacaacatccaaggcataaccaagcctgcgattcgtcgtcttg 39955033  T
Q  112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |||| ||||||||||||||| | ||||| ||  | ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||||| || ||    
T  39955032 caaggcgtggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttac 39954933  T
Q  212 ctacacagagcatgct 227  Q
     ||||| |||||||||    
T  39954932 ttacactgagcatgct 39954917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 160
Target Start/End: Original strand, 10575300 - 10575430
Alignment:
Q  30 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 129  Q
    |||||||| || |||||  |||| || ||||| || ||||| ||||||||||||||||||||||| || ||||||||  | || ||| | || |||||||    
T  10575300 ggaaaggggggtgcaaagagacatcgcaaggttctccgtgacaacatccaaggaatcacaaagccagcgattcgtcgattggcgagaagaggaggtgtga 10575399  T
Q  130 agcgtatcagtggcttaatctatgaagaaac 160  Q
    |  | |||||||| || |||||||| |||||    
T  10575400 aaagaatcagtggattgatctatgaggaaac 10575430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 12 - 246
Target Start/End: Complemental strand, 26358835 - 26358601
Alignment:
Q  12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||||||||||||| | |||||||| || ||||| || || || || || ||||| |||||||| || ||||| || || || || ||||||||||| |    
T  26358835 aaaggaggaaagggtttaggaaagggtggtgcaaagcgtcatcgcaaagttcttcgagataacattcagggaattaccaaacccgcgattcgtcgtcttg 26358736  T
Q  112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    |||| ||||||||||| || |||||||||||  | |||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||    
T  26358735 caaggcgtggtggtgtaaaacgtatcagtggtctgatctatgaagaaactcgtggtgttctcaagatatttcttgagaatgttattcgtgatgctgtcac 26358636  T
Q  212 ctacacagagcatgctcgccgtaagactgttactg 246  Q
     ||||| || |||||||| || || || |||||||    
T  26358635 ttacactgaacatgctcgtcgcaaaacagttactg 26358601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 12 - 246
Target Start/End: Original strand, 41027467 - 41027701
Alignment:
Q  12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    ||||| ||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| ||||||||| | |    
T  41027467 aaaggtggaaagggattgggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacattcaaggaattacgaagcctgcgattcgtcgtttgg 41027566  T
Q  112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    || |  | || || ||||||||||| || || || ||||| ||||| || ||||||||  | ||||||||| | |||||||| ||||||||||| || ||    
T  41027567 cacgtagaggaggagtgaagcgtataagcggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttac 41027666  T
Q  212 ctacacagagcatgctcgccgtaagactgttactg 246  Q
     ||||||||||| ||| |  | |||||||||||||    
T  41027667 ttacacagagcacgctaggagaaagactgttactg 41027701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 21584881 - 21584670
Alignment:
Q  15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||  ||||| | || || |||||||||||||| || |||||||| ||||| || ||||||||  | || |    
T  21584881 ggaggtaagggactaggaaagggaggtgcaaagagacacaggaaagttcttcgtgataacattcagggaatcaccaagccagcgattcgtcgattggcga 21584782  T
Q  115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttg-agaatgtgattcgtgatgcagtcacct 213  Q
    || | |||||||| ||| | |||||||| || || ||||| |||||  | || ||||| ||||| ||||||| ||||||||||||||||||| || || |    
T  21584781 gaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagat-tttcttggagaatgtgattcgtgatgcggttacgt 21584683  T
Q  214 acacagagcatgc 226  Q
    |||| ||||||||    
T  21584682 acactgagcatgc 21584670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 24920122 - 24919962
Alignment:
Q  63 cttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactc 162  Q
    ||||||||||||||||| || ||||| |||||||||||||||||  | |||||| | |||||||||||| | ||||| || || ||||||||||||||      
T  24920122 cttcgtgataacatccagggtatcaccaagcctgcaattcgtcgattggcaagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaacca 24920023  T
Q  163 gtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 223  Q
    | || ||  | ||||||||  | |||||||| ||||||||||| || || ||||| |||||    
T  24920022 gaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgacatacactgagca 24919962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 24923744 - 24923536
Alignment:
Q  15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||  | ||  | ||||| ||||||||||||||||| || ||||| |||||||| ||||||||  | ||||    
T  24923744 ggaggtaagggactcggaaagggaggtgcaaagaggcatagaaaggttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattggcaa 24923645  T
Q  115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcaccta 214  Q
    || | |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| ||||||||||| || || ||    
T  24923644 gaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgacata 24923545  T
Q  215 cacagagca 223  Q
    ||| |||||    
T  24923544 cactgagca 24923536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 24497543 - 24497335
Alignment:
Q  15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||  | ||  | ||||| |||||||| |||||||| || ||||| |||||||| ||||||||  | ||||    
T  24497543 ggaggtaagggactcggaaagggaggtgcaaagaggcataggaaggttcttcgtgacaacatccagggtatcaccaagcctgctattcgtcgattggcaa 24497444  T
Q  115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcaccta 214  Q
    || | |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | || |||||||| ||||||||||| || ||    
T  24497443 gaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttacata 24497344  T
Q  215 cacagagca 223  Q
    ||| |||||    
T  24497343 cactgagca 24497335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 12 - 244
Target Start/End: Original strand, 24981941 - 24982173
Alignment:
Q  12 aaaggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcg 111  Q
    |||||||| ||||| || ||||||||||| |||||  | ||  | || || ||||||||||||||||| || ||||| |||||||| ||||||||  | |    
T  24981941 aaaggaggtaagggactaggaaagggaggtgcaaagaggcataggaaagttcttcgtgataacatccagggtatcaccaagcctgctattcgtcgattgg 24982040  T
Q  112 caagacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcac 211  Q
    ||||| | |||||||| ||| | |||||||| || || |||||||||||  | || ||  | ||||||||  | |||||||| || ||||||||||| ||    
T  24982041 caagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttac 24982140  T
Q  212 ctacacagagcatgctcgccgtaagactgttac 244  Q
     ||||| ||||| ||| |  | |||||||||||    
T  24982141 atacactgagcacgctaggaggaagactgttac 24982173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 31825841 - 31825633
Alignment:
Q  15 ggaggaaagggtcttggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaa 114  Q
    ||||| ||||| || ||||||||||| |||||| | ||| | || || || || || |||||||| || ||||| |||||||| ||||||||  | || |    
T  31825841 ggaggtaaggggctaggaaagggaggtgcaaaaaggcacagaaaagttctccgcgacaacatccagggtatcactaagcctgccattcgtcgattggcga 31825742  T
Q  115 gacgtggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcaccta 214  Q
    || | |||||||||||| | |||||||| || ||||||||||||||| | || ||  | ||||||||  | |||||||| || |||||||| ||||| ||    
T  31825741 gaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacata 31825642  T
Q  215 cacagagca 223  Q
    ||| |||||    
T  31825641 cactgagca 31825633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 223
Target Start/End: Original strand, 25084978 - 25085144
Alignment:
Q  57 aaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtgaagcgtatcagtggcttaatctatgaag 156  Q
    ||||| ||||||||||||||||| || ||||| |||||||| |||||| |  | || ||| | |||||||||||| | |||||||| || || |||||||    
T  25084978 aaggttcttcgtgataacatccagggtatcaccaagcctgccattcgtagattggcgagaagaggtggtgtgaagagaatcagtggtttgatatatgaag 25085077  T
Q  157 aaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgcagtcacctacacagagca 223  Q
    ||||  | || ||  | ||||||||  | ||||||||||| ||||||||||| || ||||| |||||    
T  25085078 aaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacatacactgagca 25085144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 30 - 163
Target Start/End: Complemental strand, 14261301 - 14261168
Alignment:
Q  30 ggaaagggaggagcaaaacgacaccgtaaggtgcttcgtgataacatccaaggaatcacaaagcctgcaattcgtcgtctcgcaagacgtggtggtgtga 129  Q
    ||||||||||| |||||  |||| || || ||||||||||| ||||||||||||||||||||||| || ||||| ||  | || ||| | || |||||||    
T  14261301 ggaaagggaggtgcaaagagacatcgcaaagtgcttcgtgacaacatccaaggaatcacaaagccagcgattcggcgattagcgagaagaggaggtgtga 14261202  T
Q  130 agcgtatcagtggcttaatctatgaagaaactcg 163  Q
    || | ||||| || || || ||||||||||||||    
T  14261201 agagaatcagcgggttgatttatgaagaaactcg 14261168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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