View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19280_low_4 (Length: 245)
Name: NF19280_low_4
Description: NF19280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19280_low_4 |
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| [»] scaffold0119 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: scaffold0119 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 13571 - 13799
Alignment:
| Q |
17 |
ttaacatcttttgtaacggcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctc |
116 |
Q |
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| T |
13571 |
ttaacatcttttgtaacggcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctc |
13670 |
T |
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| Q |
117 |
tttgtgtataatctttttcattattttcttcttctccnnnnnnnncaacatccatgctgtacacttttgattcactacgtgctagtgtagctgcatggtg |
216 |
Q |
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| T |
13671 |
tttgtgtataatctttttcatcattttcttcttctccttttttttcaacatccatgctgtacacttttgattcactacgtgctagtgtagctgcatggtg |
13770 |
T |
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| Q |
217 |
gtgctgaatttctgccatagatctaaata |
245 |
Q |
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| T |
13771 |
gtgctgaatttctgccatagatctaaata |
13799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 245
Target Start/End: Original strand, 19251 - 19479
Alignment:
| Q |
17 |
ttaacatcttttgtaacggcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19251 |
ttaacatcttttgtaacggcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctc |
19350 |
T |
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| Q |
117 |
tttgtgtataatctttttcattattttcttcttctccnnnnnnnncaacatccatgctgtacacttttgattcactacgtgctagtgtagctgcatggtg |
216 |
Q |
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| T |
19351 |
tttgtgtataatctttttcatcattttcttcttctccttttttttcaacatccatgctgtacacttttgattcactacgtgctagtgtagctgcatggtg |
19450 |
T |
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| Q |
217 |
gtgctgaatttctgccatagatctaaata |
245 |
Q |
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| T |
19451 |
gtgctgaatttctgccatagatctaaata |
19479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 1293023 - 1292795
Alignment:
| Q |
17 |
ttaacatcttttgtaacggcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctc |
116 |
Q |
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| T |
1293023 |
ttaacatcttttgtaacggcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctc |
1292924 |
T |
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| Q |
117 |
tttgtgtataatctttttcattattttcttcttctccnnnnnnnncaacatccatgctgtacacttttgattcactacgtgctagtgtagctgcatggtg |
216 |
Q |
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| T |
1292923 |
tttgtgtataatctttttcatcattttcttcttctccttttttttcaacatccatgttgtacacttttgattcactacgtgctagtgtagctgcatggtg |
1292824 |
T |
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| Q |
217 |
gtgctgaatttctgccatagatctaaata |
245 |
Q |
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| T |
1292823 |
gtgctgaatttctgccatagatctaaata |
1292795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 12281624 - 12281540
Alignment:
| Q |
35 |
gcaccaacacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
119 |
Q |
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| T |
12281624 |
gcaccgacacccatcattagcgaagctgtagagactaatccatcgttagcgcctaaaacagctgctcttagccattgtgatcttt |
12281540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 41 - 119
Target Start/End: Original strand, 44635687 - 44635765
Alignment:
| Q |
41 |
acacccatcattagggatgctgttgagagtaaaccatcattagcacctaaaacagctgccctaagccattgtgctcttt |
119 |
Q |
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|||||||||||||| ||||||||||| | ||| ||||||||||| |||||||| || || | |||||||||| ||||| |
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| T |
44635687 |
acacccatcattagtgatgctgttgaaactaatccatcattagctcctaaaactgcggcacgtagccattgtgatcttt |
44635765 |
T |
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