View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19280_low_5 (Length: 244)
Name: NF19280_low_5
Description: NF19280
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19280_low_5 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold0119 (6 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 66 - 244
Target Start/End: Original strand, 1292590 - 1292768
Alignment:
| Q |
66 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtgtataagttgagttttcacgcg |
165 |
Q |
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| T |
1292590 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtgtataagttgagttttcacgcg |
1292689 |
T |
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| Q |
166 |
tggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttacttcaatatccaatatt |
244 |
Q |
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| T |
1292690 |
tggcatccactaatttaattctataaatacctttatccaaaggcgtgtgtcttccacacttacttcaatatccaatatt |
1292768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 1292431 - 1292493
Alignment:
| Q |
3 |
aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
65 |
Q |
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| T |
1292431 |
aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
1292493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 13937 - 13826
Alignment:
| Q |
129 |
aaaagttattaaagtgtataagttgagttttcacgcgtggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttac |
228 |
Q |
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| T |
13937 |
aaaagttattaaagtgtatacgttgagttttcacgcgtggcacccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccac----ac |
13842 |
T |
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| Q |
229 |
ttcaatatccaatatt |
244 |
Q |
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| T |
13841 |
ttcaatatccaatatt |
13826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 129 - 244
Target Start/End: Complemental strand, 19617 - 19506
Alignment:
| Q |
129 |
aaaagttattaaagtgtataagttgagttttcacgcgtggcatccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccacacttac |
228 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19617 |
aaaagttattaaagtgtatacgttgagttttcacgcgtggcacccactaatttaattctataaatacctttatccgaaggcgtgtgtcttccac----ac |
19522 |
T |
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| Q |
229 |
ttcaatatccaatatt |
244 |
Q |
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| T |
19521 |
ttcaatatccaatatt |
19506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 14158 - 14080
Alignment:
| Q |
66 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
144 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14158 |
gtataaagagataaattaccatccaaattaaaatcaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
14080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 66 - 144
Target Start/End: Complemental strand, 19838 - 19760
Alignment:
| Q |
66 |
gtataaagagataaattaccatccaaattaaaaccaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
144 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19838 |
gtataaagagataaattaccatccaaattaaaatcaaagtatgaacgcattagattccaaattaaaagttattaaagtg |
19760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 14318 - 14256
Alignment:
| Q |
3 |
aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
65 |
Q |
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| T |
14318 |
aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
14256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 19998 - 19936
Alignment:
| Q |
3 |
aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
65 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19998 |
aaatgaataataaaaactctcttttagcgatattcctttcacatgctttgcacttatttaact |
19936 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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