View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_high_14 (Length: 329)
Name: NF19281_high_14
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_high_14 |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 36734557 - 36734247
Alignment:
| Q |
18 |
ataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaaatcaaaatacga------gtgcatataatgtaaatctgagtcacttgtcact |
111 |
Q |
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| T |
36734557 |
ataagaagtttcatgtttcaagttcgccaattatattttaaaaacaaaatcaaaatacgatctagagtgcatataatgtaaatctgagtcacttgtcact |
36734458 |
T |
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| Q |
112 |
taccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttga |
211 |
Q |
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| T |
36734457 |
taccaagatgaaggcttttatgttctccattttcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaatttga |
36734358 |
T |
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| Q |
212 |
ccttctcctccaccaacttcctttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttccttta |
311 |
Q |
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| T |
36734357 |
ccttctcctccaccaacttcttttctcctcctccttacttcttgatgctccttgataatcctctccatcatagaatcaaacctgtccctaatttcctcta |
36734258 |
T |
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| Q |
312 |
accctttgcta |
322 |
Q |
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| T |
36734257 |
accctttgcta |
36734247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0171 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 206
Target Start/End: Complemental strand, 24649 - 24587
Alignment:
| Q |
144 |
tcaatttgatttcagagctctcatcttcaagaatatccaataaaatatcaagtagatccttaa |
206 |
Q |
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| T |
24649 |
tcaattttatttcactgctctcatcttcatgaatttccaacaaaatatcaagcaaatccttaa |
24587 |
T |
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