View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19281_high_19 (Length: 251)
Name: NF19281_high_19
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 19256740 - 19256974
Alignment:
| Q |
1 |
tttcatacacataataattaattaagtacaagagtaaaaacacaatacatacgtcgattttctgataggcattgtcagattcattaggaggtgttgtcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19256740 |
tttcatacacataataattaattaagtacaagagtaaaaacacaatacatacgtcgattttctgataggcattgtcagattcattaggaggtgttgtcgg |
19256839 |
T |
|
| Q |
101 |
agcagaacgtcccttaggcaaaggagctaaccctagctttgccctatcttccttactcattacatccttcttggatgtgtgatcttatcacaaaccaaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19256840 |
agcagaacgtcccttaggcaaaggagctaaccctagctttgccctatcttccttactcattacatccttcttggatgtgtgatctgatcacaaaccaaat |
19256939 |
T |
|
| Q |
201 |
tcaattataatattagtatatacatgatttgttat |
235 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
19256940 |
tcaattataatattagtgtatacatgatttgttat |
19256974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University