View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_high_3 (Length: 497)
Name: NF19281_high_3
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 3e-77; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 282 - 482
Target Start/End: Original strand, 18106723 - 18106922
Alignment:
| Q |
282 |
gatagactggtttggtgtattaggtgtgggtagcagaattggattattgtttgcttatgcacaatagacttgnnnnnnnacttattacttctagcctgat |
381 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| || |
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| T |
18106723 |
gatagactggtttggtgtattaggtgtgggtaactgaattggattattgcttgcttatgcacaatagacttgtttttt-acttattatttctagcctaat |
18106821 |
T |
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| Q |
382 |
catagtataccttgtgtaagtcatttgcaagaataaattggagtaaatgccagagatttaatgttagatgaactcaattataggtttcattccggtctgt |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
18106822 |
catagtataccttgtgtaagtcatttgcaagaataaattggagtaaataccagagatttaatgttagatgaactcaattataggtttcatttcggtctgt |
18106921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 18106388 - 18106508
Alignment:
| Q |
18 |
aataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattgttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18106388 |
aataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattgttt |
18106487 |
T |
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| Q |
118 |
tgttgcttcagaatgatgatt |
138 |
Q |
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| T |
18106488 |
tgttgcttcagaatgatgatt |
18106508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 18097270 - 18097390
Alignment:
| Q |
18 |
aataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattgttt |
117 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| | |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18097270 |
aataattagttttaagccattcaggcatgttgtgcttagactgtgccacttgatcaatgcatgtgaatttggttgttagaagtcagttatagaattgttt |
18097369 |
T |
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| Q |
118 |
tgttgcttcagaatgatgatt |
138 |
Q |
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|||||||||||||||| |||| |
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| T |
18097370 |
tgttgcttcagaatgacgatt |
18097390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 20 - 138
Target Start/End: Complemental strand, 18138981 - 18138863
Alignment:
| Q |
20 |
taattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtgcatgtgaatttggttgttagaagtcagttatagaattgttttg |
119 |
Q |
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|||||||||||||||||||| |||||||||||| |||||| |||||| |||||| || |||||| |||||||||||||||||||||||| |||||||||| |
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| T |
18138981 |
taattagttttaagccattcaggcatgttgtgcttagagtgtgccacttgatcaatgaatgtgagtttggttgttagaagtcagttataaaattgttttg |
18138882 |
T |
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| Q |
120 |
ttgcttcagaatgatgatt |
138 |
Q |
| |
|
|||||||||||||| |||| |
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| T |
18138881 |
ttgcttcagaatgacgatt |
18138863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 134 - 285
Target Start/End: Original strand, 18106531 - 18106703
Alignment:
| Q |
134 |
tgattggtatggtattgttttgttgcttcatgcttagttagttctatcttttgt---------------------tagtagtgttattattttggtgata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||| |
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| T |
18106531 |
tgattggtatggtattgttttgttgcttcatgcttagttagttctatcttttgtcgtagacggccttgatattgttagtagtattattattttggcgata |
18106630 |
T |
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| Q |
213 |
cacatatttgactgcattatttctacaaaattgaagctttatctttgttagaatatatcaatgaagaaagata |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||| |
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| T |
18106631 |
cacatatttgactgcattatttctacaaaattgaagctttatcttagttagaatatatcacagaaaaaagata |
18106703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 434 - 487
Target Start/End: Original strand, 13025852 - 13025905
Alignment:
| Q |
434 |
gagatttaatgttagatgaactcaattataggtttcattccggtctgtgctcct |
487 |
Q |
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||||||| || |||||||||||| |||||||||||||||| || ||||| |||| |
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| T |
13025852 |
gagatttgattttagatgaactcgattataggtttcattcgggcctgtgttcct |
13025905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 37876140 - 37876180
Alignment:
| Q |
187 |
ttagtagtgttattattttggtgatacacatatttgactgc |
227 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
37876140 |
ttagtagtgttattattttggttatacacatatttgactgc |
37876180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 37876069 - 37876119
Alignment:
| Q |
139 |
ggtatggtattgttttgtt-gcttcatgcttagttagttctatcttttgtt |
188 |
Q |
| |
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|||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
37876069 |
ggtatggtattggtttatttgcttcatgcttagttagttctatcttttgtt |
37876119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 37875943 - 37875985
Alignment:
| Q |
18 |
aataattagttttaagccattcgggcatgttgtgcctagagta |
60 |
Q |
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|||||||||||||||||||||| ||||||||| || ||||||| |
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| T |
37875943 |
aataattagttttaagccattcaggcatgttgcgcttagagta |
37875985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 23895541 - 23895501
Alignment:
| Q |
187 |
ttagtagtgttattattttggtgatacacatatttgactgc |
227 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
23895541 |
ttagtagtgttattattttggttatacacatatttgactgc |
23895501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 23895612 - 23895562
Alignment:
| Q |
139 |
ggtatggtattgttttgtt-gcttcatgcttagttagttctatcttttgtt |
188 |
Q |
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|||||||||||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
23895612 |
ggtatggtattggtttatttgcttcatgcttagttagttctatcttttgtt |
23895562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 23895738 - 23895696
Alignment:
| Q |
18 |
aataattagttttaagccattcgggcatgttgtgcctagagta |
60 |
Q |
| |
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|||||||||||||||||||||| ||||||||| || ||||||| |
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| T |
23895738 |
aataattagttttaagccattcaggcatgttgcgcttagagta |
23895696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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