View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19281_high_4 (Length: 485)

Name: NF19281_high_4
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19281_high_4
NF19281_high_4
[»] chr7 (2 HSPs)
chr7 (12-182)||(33855852-33856024)
chr7 (198-244)||(33855427-33855473)
[»] chr6 (4 HSPs)
chr6 (12-182)||(26098915-26099087)
chr6 (198-244)||(26098288-26098334)
chr6 (198-244)||(25998763-25998809)
chr6 (121-182)||(25999184-25999245)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 33856024 - 33855852
Alignment:
Q  12 acatgaaaaatgaaccctacgataaaaagttgcatatatccccaatttcatcacaccaatactataagataacacttcaaagaaaacaa----accaaag 107  Q
    |||| |||||||||||||  |||||||  ||| |||||||| ||||||| |||||   | ||||||||||||||||||||| ||| |||    |||||||    
T  33856024 acattaaaaatgaaccct--gataaaatattgtatatatcctcaatttcctcacaaagaaactataagataacacttcaaataaagcaattaaaccaaag 33855927  T
Q  108 agaaagtttctagaagtttcccaatccttgcttcttctttttccaccaataaggcaaaaaagaccaacatgcgaa 182  Q
     ||||||||||| |||||| ||||||||||||||||  || ||||||||||||  || |||||||||||||||||    
T  33855926 ggaaagtttctacaagttttccaatccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa 33855852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 33855473 - 33855427
Alignment:
Q  198 agggttgccttaataaacacacaactattaacatataaatagcctgt 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  33855473 agggttgccttaataaatacacaactattaacatataaatagcctgt 33855427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 12 - 182
Target Start/End: Complemental strand, 26099087 - 26098915
Alignment:
Q  12 acatgaaaaatgaaccctacgataaaaagttgcatatatccccaatttcatcacaccaatactataagataacacttcaaagaaaacaa----accaaag 107  Q
    |||| |||||||||||||  |||||||  ||| |||||||| ||||||| |||||   | ||||||||||||||||||||| ||| |||    |||||||    
T  26099087 acattaaaaatgaaccct--gataaaatattgtatatatcctcaatttcctcacaaagaaactataagataacacttcaaataaagcaattaaaccaaag 26098990  T
Q  108 agaaagtttctagaagtttcccaatccttgcttcttctttttccaccaataaggcaaaaaagaccaacatgcgaa 182  Q
     ||||||||||| |||||| | ||||||||||||||  || ||||||||||||  || |||||||||||||||||    
T  26098989 ggaaagtttctacaagttttcaaatccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa 26098915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 26098334 - 26098288
Alignment:
Q  198 agggttgccttaataaacacacaactattaacatataaatagcctgt 244  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||    
T  26098334 agggttgccttaataaatacacaactattaacatataaatagcctgt 26098288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 25998809 - 25998763
Alignment:
Q  198 agggttgccttaataaacacacaactattaacatataaatagcctgt 244  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  25998809 agggttgccttaataaatacacaagtattaacatataaatagcctgt 25998763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 25999245 - 25999184
Alignment:
Q  121 aagtttcccaatccttgcttcttctttttccaccaataaggcaaaaaagaccaacatgcgaa 182  Q
    |||||| ||||||||||||||||  || ||||||||||||  || |||||||||||||||||    
T  25999245 aagttttccaatccttgcttctttcttctccaccaataagataagaaagaccaacatgcgaa 25999184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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