View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_high_6 (Length: 461)
Name: NF19281_high_6
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_high_6 |
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| [»] scaffold0027 (4 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 211; Significance: 1e-115; HSPs: 4)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 232 - 446
Target Start/End: Complemental strand, 60377 - 60163
Alignment:
| Q |
232 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60377 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
60278 |
T |
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| Q |
332 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtattatcacattggtcatttctttcagctgaagatgataatggtgcttcttg |
431 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60277 |
tagacataggtttctttctatcacctttaacttgatctttagttattgtattatcacattggtcatttctttcagctgaagatgataatggtgcttcttg |
60178 |
T |
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| Q |
432 |
agttataggcaaaac |
446 |
Q |
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||||||||||||||| |
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| T |
60177 |
agttataggcaaaac |
60163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 232 - 446
Target Start/End: Complemental strand, 67404 - 67190
Alignment:
| Q |
232 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
331 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
67404 |
aagtaaagaagttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
67305 |
T |
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| Q |
332 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtattatcacattggtcatttctttcagctgaagatgataatggtgcttcttg |
431 |
Q |
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| T |
67304 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtattatcacattggtcatttctttcagctgaagatgataatggtgcttcttg |
67205 |
T |
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| Q |
432 |
agttataggcaaaac |
446 |
Q |
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||||||||||||||| |
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| T |
67204 |
agttataggcaaaac |
67190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 60589 - 60443
Alignment:
| Q |
22 |
gttaagctaggggaccatttggcattataacttggctacagtattgacaca--acaacaataatataaggacnnnnnnnttatctccctaacatagtgtt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
60589 |
gttaagctaggggaccatttggcattataacttggctacagtattgacacataacaacaataatataaggacaaaaaaattatctccctaacatagtgtt |
60490 |
T |
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| Q |
120 |
cacatatctaaaacatagaattgaaaatgatatttttaccatgcaac |
166 |
Q |
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| T |
60489 |
cacatatctaaaacatagaattgaaaatgatatttttatcatgcaac |
60443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #4
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 22 - 166
Target Start/End: Complemental strand, 67616 - 67470
Alignment:
| Q |
22 |
gttaagctaggggaccatttggcattataacttggctacagtattgacaca--acaacaataatataaggacnnnnnnnttatctccctaacatagtgtt |
119 |
Q |
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| T |
67616 |
gttaagctaggggaccatttggcattataacttggctacagtattgacacataacaacaataatataaggacaaaaaaattatctccctaacatagtgtt |
67517 |
T |
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| Q |
120 |
cacatatctaaaacatagaattgaaaatgatatttttaccatgcaac |
166 |
Q |
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| T |
67516 |
cacatatctaaaacatagaattgaaaatgatatttttatcatgcaac |
67470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 232 - 446
Target Start/End: Original strand, 21323430 - 21323644
Alignment:
| Q |
232 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21323430 |
aagtaaagaggttgaaaaagaattacctttcttccatagaattttcctcctttatctgtcttggcagaggcagcagcccatctaagcaactctttcattc |
21323529 |
T |
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| Q |
332 |
tagacataggcttctttctatcacctttaacttgatctttagttattgtattatcacattggtcatttctttcagctgaagatgataatggtgcttcttg |
431 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21323530 |
tagacataggtttctttctatcacctttaacttgatctttagttattgtattatcacattggtcatttctttcagctgaagatgataatggtgcttcttg |
21323629 |
T |
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| Q |
432 |
agttataggcaaaac |
446 |
Q |
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| T |
21323630 |
agttataggcaaaac |
21323644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 22 - 166
Target Start/End: Original strand, 21323218 - 21323364
Alignment:
| Q |
22 |
gttaagctaggggaccatttggcattataacttggctacagtattgacaca--acaacaataatataaggacnnnnnnnttatctccctaacatagtgtt |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21323218 |
gttaagctaggggaccatttggcattataacttggctacagtattgacacataacaacaataatataaggacaaaaaaattatctccctaacatagtgtt |
21323317 |
T |
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| Q |
120 |
cacatatctaaaacatagaattgaaaatgatatttttaccatgcaac |
166 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21323318 |
cacatatctaaaacatagaattgaaaatgatatttttatcatgcaac |
21323364 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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