View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19281_high_9 (Length: 384)

Name: NF19281_high_9
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19281_high_9
NF19281_high_9
[»] chr1 (20 HSPs)
chr1 (9-252)||(16142384-16142606)
chr1 (250-364)||(16142206-16142320)
chr1 (87-235)||(32083297-32083446)
chr1 (86-235)||(8671500-8671650)
chr1 (296-366)||(19936414-19936484)
chr1 (98-235)||(37463417-37463552)
chr1 (86-205)||(1210325-1210445)
chr1 (89-248)||(34827641-34827801)
chr1 (296-370)||(1661318-1661392)
chr1 (86-235)||(51441316-51441466)
chr1 (308-364)||(9599716-9599772)
chr1 (86-205)||(43240963-43241083)
chr1 (296-349)||(11331401-11331454)
chr1 (296-349)||(11489422-11489475)
chr1 (181-234)||(32066824-32066877)
chr1 (315-364)||(52442826-52442875)
chr1 (316-364)||(4379917-4379965)
chr1 (325-365)||(16822340-16822380)
chr1 (312-364)||(26016345-26016397)
chr1 (296-364)||(46226604-46226672)
[»] chr6 (7 HSPs)
chr6 (87-235)||(5258702-5258851)
chr6 (87-223)||(10100421-10100558)
chr6 (296-366)||(28027145-28027215)
chr6 (298-365)||(608053-608120)
chr6 (312-366)||(33083966-33084020)
chr6 (87-125)||(33495788-33495826)
chr6 (296-364)||(6056092-6056160)
[»] chr5 (14 HSPs)
chr5 (139-248)||(36200416-36200525)
chr5 (86-235)||(2076026-2076176)
chr5 (87-235)||(3394292-3394440)
chr5 (108-234)||(16347955-16348082)
chr5 (86-235)||(20318571-20318721)
chr5 (305-364)||(1275166-1275225)
chr5 (86-235)||(1274845-1274995)
chr5 (86-235)||(10638877-10639027)
chr5 (305-364)||(12492709-12492768)
chr5 (296-371)||(21093668-21093743)
chr5 (86-235)||(1288141-1288291)
chr5 (86-235)||(12492939-12493089)
chr5 (313-366)||(16134499-16134552)
chr5 (86-126)||(24178104-24178144)
[»] chr4 (12 HSPs)
chr4 (296-364)||(45205170-45205238)
chr4 (86-235)||(56374870-56375020)
chr4 (86-235)||(1777567-1777717)
chr4 (312-366)||(17900388-17900442)
chr4 (314-364)||(18499783-18499833)
chr4 (86-235)||(31960366-31960516)
chr4 (86-235)||(48623079-48623229)
chr4 (321-366)||(44860771-44860816)
chr4 (108-235)||(47265756-47265884)
chr4 (86-205)||(48174675-48174795)
chr4 (329-370)||(34233349-34233390)
chr4 (305-349)||(41009687-41009731)
[»] chr3 (10 HSPs)
chr3 (296-364)||(345033-345101)
chr3 (108-234)||(27917174-27917301)
chr3 (89-234)||(19757651-19757797)
chr3 (296-364)||(27917464-27917532)
chr3 (169-248)||(48221448-48221527)
chr3 (86-205)||(52138408-52138528)
chr3 (89-126)||(19736749-19736786)
chr3 (303-364)||(45236755-45236816)
chr3 (303-364)||(50249280-50249341)
chr3 (296-360)||(26490209-26490273)
[»] chr2 (16 HSPs)
chr2 (90-225)||(30743207-30743343)
chr2 (86-235)||(2610108-2610258)
chr2 (86-205)||(4807172-4807292)
chr2 (305-364)||(8180681-8180740)
chr2 (305-364)||(45077649-45077708)
chr2 (303-361)||(19337174-19337232)
chr2 (299-349)||(37282002-37282052)
chr2 (149-235)||(38453172-38453258)
chr2 (321-362)||(1456150-1456191)
chr2 (329-370)||(9647921-9647962)
chr2 (86-126)||(452278-452318)
chr2 (190-234)||(7789092-7789136)
chr2 (86-126)||(8180360-8180400)
chr2 (116-235)||(13148923-13149043)
chr2 (296-364)||(23714580-23714648)
chr2 (296-364)||(24102252-24102320)
[»] chr7 (17 HSPs)
chr7 (87-224)||(32630188-32630326)
chr7 (151-235)||(38606651-38606735)
chr7 (86-234)||(36869842-36869991)
chr7 (86-235)||(37616496-37616646)
chr7 (86-235)||(46356403-46356553)
chr7 (169-225)||(18608252-18608308)
chr7 (169-225)||(18626570-18626626)
chr7 (169-225)||(18637244-18637300)
chr7 (169-225)||(18650679-18650735)
chr7 (86-205)||(39906961-39907081)
chr7 (169-237)||(43793590-43793658)
chr7 (296-364)||(47848566-47848634)
chr7 (313-364)||(42187380-42187431)
chr7 (305-364)||(49029177-49029236)
chr7 (296-365)||(25579392-25579461)
chr7 (86-126)||(31004804-31004844)
chr7 (86-126)||(49028847-49028887)
[»] chr8 (13 HSPs)
chr8 (321-370)||(43732484-43732533)
chr8 (87-224)||(4033057-4033195)
chr8 (296-365)||(45512817-45512886)
chr8 (296-340)||(13986386-13986430)
chr8 (169-224)||(8879997-8880052)
chr8 (87-126)||(13984211-13984250)
chr8 (305-364)||(36545048-36545107)
chr8 (86-235)||(12492394-12492544)
chr8 (324-366)||(16252855-16252897)
chr8 (86-123)||(36544732-36544769)
chr8 (303-364)||(39946756-39946817)
chr8 (296-364)||(29735698-29735766)
chr8 (187-235)||(35601680-35601728)
[»] scaffold0171 (1 HSPs)
scaffold0171 (149-224)||(5836-5911)
[»] scaffold0570 (1 HSPs)
scaffold0570 (149-235)||(2822-2908)
[»] scaffold0018 (1 HSPs)
scaffold0018 (86-126)||(31048-31088)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 7e-68; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 9 - 252
Target Start/End: Complemental strand, 16142606 - 16142384
Alignment:
Q  9 gaagaaaatgaatgagaggttagagacaag-agacaagctttagaagagaatggttttccaattgagtagaagaaagattgagtagaagaaagacagaga 107  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||                 ||||||||||||||||||||||||    
T  16142606 gaagaaaatgaatgagaggttagagaccaggagacaagctttagaagagaatggttttc-----------------gattgagtagaagaaagacagaga 16142524  T
Q  108 atatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgt 206  Q
    |||||||      |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16142523 atatgga------cttcagcaaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgg 16142430  T
Q  207 gttcataatacaaaatgacaaagaaataggaacatgtgtaaacaat 252  Q
    ||||||||||||||||||| |||||| || ||||||||||||||||    
T  16142429 gttcataatacaaaatgacgaagaaaaagaaacatgtgtaaacaat 16142384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 250 - 364
Target Start/End: Complemental strand, 16142320 - 16142206
Alignment:
Q  250 aatatgtgatgttttatgggacgaattgttgagtgtttaagaacgtaaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatg 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  16142320 aatatgtgatgttttatgggacgaattgttgagtgtttaagaacgtaaccaatacgagaatcaaataagcatagtggaaatgaagatgttatgttggatg 16142221  T
Q  350 tgtgctaagactaga 364  Q
    |||| ||||||||||    
T  16142220 tgtggtaagactaga 16142206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 32083446 - 32083297
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagt 185  Q
    |||||||||| ||||| ||| ||||||||||||||||||| ||||  ||||   | || ||| |||||||||| || ||||  ||||||||| |||||||    
T  32083446 tgagtagaagcaagacggagtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagt 32083347  T
Q  186 gacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
      |||| ||||||||||||| || |||| |||||||||||  ||||||||    
T  32083346 tgcacaatttaaatatcttgggtccatagtacaaaatgacggagaaatag 32083297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 8671500 - 8671650
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| ||||||||||||||||||| | ||  ||||  || || ||| |||||||||| || ||||  ||||||||| || |||    
T  8671500 ttgagtagaagcaagacggagtatatggaatgtaacttcagcagaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccctaag 8671599  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  ||||||||||| |||||||||    
T  8671600 ttacacggtttaaatatcttgggtccttcgtacaaaatgacgaagaaatag 8671650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 19936414 - 19936484
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||||| | ||||||||| ||||||||||||| ||||| ||||| ||||||||| ||| ||||||||||||    
T  19936414 aaccaacatgagaatcaaataagcatagcggagatgagaatgttgtgttggatgagtggtaagactagatg 19936484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 37463552 - 37463417
Alignment:
Q  98 aagacagagaatatggaatgtaacttcagaaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaa 197  Q
    ||||||||| ||||||||||||||||||| |||  ||    ||||| ||| |||||||||| || ||||  |||||||||  || ||| ||||| |||||    
T  37463552 aagacagagtatatggaatgtaacttcagcaaa--agccggagttctaccttggaggtgaaagttggagatcatatcatactccgagttacacagtttaa 37463455  T
Q  198 atatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    |||||||| || |||| |||||||||||  ||||||||    
T  37463454 atatcttgagtccatagtacaaaatgacggagaaatag 37463417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 1210325 - 1210445
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  1210325 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 1210424  T
Q  185 tgacacattttaaatatcttg 205  Q
    | ||||| |||||||||||||    
T  1210425 ttacacagtttaaatatcttg 1210445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 248
Target Start/End: Complemental strand, 34827801 - 34827641
Alignment:
Q  89 agtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtga 187  Q
    |||||||  |||||| || ||||||||||||||||||  |||| |||||   || |||  ||||||||||| |||||||  ||||||||| || |||| |    
T  34827801 agtagaactaagacaaagtatatggaatgtaacttcatcaaaagaagaagtggtcccatgatggaggtgaaagtgggagatcatatcataccctaagtta 34827702  T
Q  188 cacattttaaatatcttgtgttcataatacaaaatgacaaagaaataggaacatgtgtaaa 248  Q
    ||   ||||||||||||| || |||| |||||||||||  |||||||| | ||| ||||||    
T  34827701 caaggtttaaatatcttgggtccatagtacaaaatgacggagaaatagaagcatatgtaaa 34827641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 370
Target Start/End: Original strand, 1661318 - 1661392
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatgtgat 370  Q
    |||||| |||||||| || |||||||||| || |||| |||||| ||||| |||| || ||||||||||||||||    
T  1661318 aaccaacacgagaataaaataagcatagcagagatgaagatgttgtgttgaatgtctgataagactagatgtgat 1661392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 51441466 - 51441316
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| || ||||||| || ||||  ||||||||| ||||||    
T  51441466 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttgaaggtgaaagttggagatcatatcataccccaag 51441367  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||| ||||||||||||| ||   | ||||||||||||  ||||||||    
T  51441366 ttacacagtttaaatatcttgggtctttcatacaaaatgacggagaaatag 51441316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 364
Target Start/End: Complemental strand, 9599772 - 9599716
Alignment:
Q  308 aatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||||||||| |||| || ||||||||||| ||||||||| ||| ||||||||||    
T  9599772 aatcaagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 9599716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 43241083 - 43240963
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  43241083 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtagatctaccttggaggtgaaagttggagatcatatcataccccaag 43240984  T
Q  185 tgacacattttaaatatcttg 205  Q
    | ||||  |||||||||||||    
T  43240983 ttacacggtttaaatatcttg 43240963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 11331454 - 11331401
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatg 349  Q
    |||||| || |||||||||| ||||||||||| ||||||| ||||| |||||||    
T  11331454 aaccaacacaagaatcaagttagcatagcggagatgaggaagttatattggatg 11331401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 11489475 - 11489422
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatg 349  Q
    |||||| || |||||||||| ||||||||||| ||||||| ||||| |||||||    
T  11489475 aaccaacacaagaatcaagttagcatagcggagatgaggaagttatattggatg 11489422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 32066877 - 32066824
Alignment:
Q  181 caagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaata 234  Q
    ||||| ||||| ||||||||| ||| ||||||| |||||||||||| |||||||    
T  32066877 caagttacacagtttaaatattttgggttcatagtacaaaatgacagagaaata 32066824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 364
Target Start/End: Complemental strand, 52442875 - 52442826
Alignment:
Q  315 taagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||| |||| || ||||||||||| ||||||||||||| ||||||||||    
T  52442875 taagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactaga 52442826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 4379917 - 4379965
Alignment:
Q  316 aagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||| |||| || ||||||||||| ||||||||||||| ||||||||||    
T  4379917 aagcttagctgagatgaggatgttgtgttggatgtgtggtaagactaga 4379965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 365
Target Start/End: Complemental strand, 16822380 - 16822340
Alignment:
Q  325 ggaaatgaggatgttatgttggatgtgtgctaagactagat 365  Q
    ||||||||||||||| ||||||||||||| ||| |||||||    
T  16822380 ggaaatgaggatgttgtgttggatgtgtggtaatactagat 16822340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 26016345 - 26016397
Alignment:
Q  312 aagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||||| |||| || |||||||||||  |||||||||||| ||||||||||    
T  26016345 aagtaagcgtagcagagatgaggatgttgcgttggatgtgtggtaagactaga 26016397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 46226672 - 46226604
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| ||||||||||||||||  ||||||| |||| ||||||  |||||||| ||| | ||||||||    
T  46226672 aaccaacacgagaatcaagtaagtttagcggagatgatgatgttgcgttggatgagtggtgagactaga 46226604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 235
Target Start/End: Complemental strand, 5258851 - 5258702
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagt 185  Q
    |||||||||| |||||| || ||||||||||||||||||| ||||  ||||   | || ||| |||| ||||| || ||||  ||||||||| |||||||    
T  5258851 tgagtagaagcaagacaaagtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaagtgaaagttggagatcatatcataccccaagt 5258752  T
Q  186 gacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
     ||||| ||||||||||||| || |||| |||||||||||  ||||||||    
T  5258751 tacacagtttaaatatcttgggtccatagtacaaaatgacggagaaatag 5258702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 87 - 223
Target Start/End: Complemental strand, 10100558 - 10100421
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagt 185  Q
    |||||||||| ||||| ||| |||||||||||||||| || ||||| ||||  || || ||| |||||||||| || ||||  ||||||||| |||||||    
T  10100558 tgagtagaagcaagacggagtatatggaatgtaactttagcaaaatgagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagt 10100459  T
Q  186 gacacattttaaatatcttgtgttcataatacaaaatg 223  Q
     ||||  ||||||||||||| || |||| |||||||||    
T  10100458 tacacggtttaaatatcttgggtccatagtacaaaatg 10100421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 296 - 366
Target Start/End: Complemental strand, 28027215 - 28027145
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||||| | |||||||||||||||||||| || | ||||||||||||||||||| ||| ||||||||||||    
T  28027215 aaccaacatgagaatcaagtaagcatagcagagacgaggatgttatgttggatgagtggtaagactagatg 28027145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 298 - 365
Target Start/End: Original strand, 608053 - 608120
Alignment:
Q  298 ccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagat 365  Q
    |||| |||||||| |||||||  ||||||| |||||||||||  |||||||| ||| |||||||||||    
T  608053 ccaacacgagaataaagtaagtgtagcggagatgaggatgttccgttggatgagtggtaagactagat 608120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 33083966 - 33084020
Alignment:
Q  312 aagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||||||| |||| |||||||||||| |  |||||||||||| ||||||||||||    
T  33083966 aagtaagcgtagcagaaatgaggatgctgcgttggatgtgtggtaagactagatg 33084020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 33495788 - 33495826
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttca 125  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  33495788 tgagtagaagcaagacagagtatatggaatgtaacttca 33495826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 6056160 - 6056092
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| |||| |||||||||||| |||  |||||| |||||||  |||||||| ||| ||||||||||    
T  6056160 aaccaacacgaaaatcaagtaagcgtagtagaaatgcggatgttgcgttggatgagtggtaagactaga 6056092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 139 - 248
Target Start/End: Original strand, 36200416 - 36200525
Alignment:
Q  139 agttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaataggaa 238  Q
    ||||| || ||||||||||| |||||||| ||||||||| | ||||| ||||  ||||||||| ||| ||||||| |||||||||||| |||||||| |     
T  36200416 agttctactatggaggtgaaagtgggaggtcatatcatacctcaagttacaccgtttaaatattttgggttcatagtacaaaatgacatagaaatagtag 36200515  T
Q  239 catgtgtaaa 248  Q
    ||| ||||||    
T  36200516 catatgtaaa 36200525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 2076176 - 2076026
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcagaa-aataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||||||| | |||||||||||||||||   ||  ||||  ||||| ||| |||||||||| || ||||  ||||||||| ||||||    
T  2076176 ttgagtagaagcaagacagagtacatggaatgtaacttcagcggaaggagaagcagttctaccttggaggtgaaagttggagatcatatcataccccaag 2076077  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||| ||||||||    
T  2076076 ttacacggtttaaatatcttgggtccttcgtacaaaatgacagagaaatag 2076026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 87 - 235
Target Start/End: Original strand, 3394292 - 3394440
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagt 185  Q
    |||||||||| ||||||||| ||||||||||||| ||||| ||||  ||||   | || ||| |||||||||| || ||||  ||||||||| |||||||    
T  3394292 tgagtagaagcaagacagagtatatggaatgtaa-ttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagt 3394390  T
Q  186 gacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
     ||||  ||||||||||||| || |||| |||||||||||  ||||||||    
T  3394391 tacacggtttaaatatcttgggtccatagtacaaaatgacggagaaatag 3394440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 16348082 - 16347955
Alignment:
Q  108 atatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgt 206  Q
    ||||| ||||||||||||| ||||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||| ||||  ||||||||||||||    
T  16348082 atatgaaatgtaacttcagcaaaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgt 16347983  T
Q  207 gttcataatacaaaatgacaaagaaata 234  Q
    || |||| |||||||||||  |||||||    
T  16347982 gtccatagtacaaaatgacggagaaata 16347955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 20318571 - 20318721
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  ||||| ||| |||||||||| || ||||  ||||||||| ||||||    
T  20318571 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtagttctaccttggaggtgaaagttggagatcatatcataccccaag 20318670  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  20318671 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 20318721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 1275166 - 1275225
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||||||||||||||||| || |||||||||||  |||||||| ||| ||||||||||    
T  1275166 gagaatcaagtaagcatagcagagatgaggatgttgcgttggatgagtggtaagactaga 1275225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 1274845 - 1274995
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||  |||  ||||  || || ||| ||||| |||| || ||||  ||||||||| ||||||    
T  1274845 ttgagtagaagcaagacggagtatatggaatgtaacttcagcgaaaggagaagtaggtctaccttggagatgaaagttggagatcatatcataccccaag 1274944  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  1274945 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 1274995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 10638877 - 10639027
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||||||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || |||   ||||||||| ||||||    
T  10638877 ttgagtagaagaaagacggagtatatggaatgtaacttcagtggaaggagaagtaggtctaccttggaggtgaaagttggaaatcatatcataccccaag 10638976  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  10638977 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 10639027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Complemental strand, 12492768 - 12492709
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||||||||||  |||| || |||||||||||| |||||||| ||| ||||||||||    
T  12492768 gagaatcaagtaagtgtagcagagatgaggatgttacgttggatgagtggtaagactaga 12492709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 371
Target Start/End: Original strand, 21093668 - 21093743
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatgtgatg 371  Q
    |||||| |||||||| || ||||  ||| ||| |||||||||||  |||| ||||||| |||||||||||||||||    
T  21093668 aaccaacacgagaataaaataagtgtagtggatatgaggatgttgcgttgtatgtgtggtaagactagatgtgatg 21093743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 1288291 - 1288141
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  |  || ||| |||||||||| || ||||  ||||||||| ||||||    
T  1288291 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaagtctaccttggaggtgaaagttggagatcatatcataccccaag 1288192  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  1288191 ttacacggtttaaatatcttgagtccttcgtacaaaatgacggagaaatag 1288141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 12493089 - 12492939
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| ||||||| || || ||||  ||||||||| ||||||    
T  12493089 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtagctctaccttggaggtaaaagttggagatcatatcataccccaag 12492990  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  12492989 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 12492939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 366
Target Start/End: Complemental strand, 16134552 - 16134499
Alignment:
Q  313 agtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||||| |||||  ||||||||||||| |||||||||| || ||||||||||||    
T  16134552 agtaagtatagcataaatgaggatgttgtgttggatgtatggtaagactagatg 16134499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 24178104 - 24178144
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  24178104 ttgagtagaagcaagacggagtatatggaatgtaacttcag 24178144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 45205238 - 45205170
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||| ||||||||| ||| ||||||||||    
T  45205238 aaccaacacgagaatcaagtaagcgtagcggagatgaggatgttgtgttggatgagtggtaagactaga 45205170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 56374870 - 56375020
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcagaa-aataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || |||| |||||||||| ||||||    
T  56374870 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagagcatatcataccccaag 56374969  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  56374970 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 56375020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 1777717 - 1777567
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcagaa-aataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| || || ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || |||   ||||||||| ||||||    
T  1777717 ttgagtagaagcaatacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggaaatcatatcataccccaag 1777618  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | |||| |||||||||||||| || | |  |||||||||||| ||||||||    
T  1777617 ttacacgttttaaatatcttgggtccttcgtacaaaatgacagagaaatag 1777567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 366
Target Start/End: Original strand, 17900388 - 17900442
Alignment:
Q  312 aagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||||||| |||| ||||||||||||||  |||||||||||| ||||||||||||    
T  17900388 aagtaagcgtagcagaaatgaggatgttgcgttggatgtgtggtaagactagatg 17900442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 18499783 - 18499833
Alignment:
Q  314 gtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||||||| ||||||| |||||| ||||||||||||| ||||||||||    
T  18499783 gtaagcatagcagaaatgaagatgttgtgttggatgtgtgataagactaga 18499833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 31960516 - 31960366
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||||||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| |||||     
T  31960516 ttgagtagaagcaagacagagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaat 31960417  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  31960416 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 31960366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 48623229 - 48623079
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || |||| |||||||||| |||||     
T  48623229 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagagcatatcataccccaaa 48623130  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  48623129 ttacacgatttaaatatcttgggtccttcgtacaaaatgacggagaaatag 48623079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 321 - 366
Target Start/End: Original strand, 44860771 - 44860816
Alignment:
Q  321 tagcggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||| |||||||||||||| ||||||||||||| ||||||||||||    
T  44860771 tagcagaaatgaggatgttgtgttggatgtgtggtaagactagatg 44860816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 235
Target Start/End: Complemental strand, 47265884 - 47265756
Alignment:
Q  108 atatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgt 206  Q
    ||||| ||||||||||||| ||||  ||||  || || ||| |||||||||| || ||||| ||||||||| ||||||| ||| | |||||||||||||     
T  47265884 atatgaaatgtaacttcagcaaaaggagaagtaggtctaccttggaggtgaaagttggaggtcatatcataccccaagttacatagtttaaatatcttgg 47265785  T
Q  207 gttcataatacaaaatgacaaagaaatag 235  Q
     | |||| || ||||||||  ||||||||    
T  47265784 atccatagtataaaatgacggagaaatag 47265756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 48174795 - 48174675
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  48174795 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 48174696  T
Q  185 tgacacattttaaatatcttg 205  Q
    | ||||  |||||||||||||    
T  48174695 ttacacggtttaaatatcttg 48174675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 34233390 - 34233349
Alignment:
Q  329 atgaggatgttatgttggatgtgtgctaagactagatgtgat 370  Q
    |||| |||||| ||||||||||||| ||||||||||||||||    
T  34233390 atgatgatgttgtgttggatgtgtgataagactagatgtgat 34233349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 349
Target Start/End: Complemental strand, 41009731 - 41009687
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatg 349  Q
    ||||||||||||||  |||||||||||||||||||  ||||||||    
T  41009731 gagaatcaagtaagtgtagcggaaatgaggatgttgcgttggatg 41009687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 345101 - 345033
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| || ||||| ||||||||||||||||||| ||||||||||||||||| |||| ||||||||||    
T  345101 aaccaacacaagaataaagtaagcatagcggaaattaggatgttatgttggatttgtggtaagactaga 345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 27917174 - 27917301
Alignment:
Q  108 atatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgt 206  Q
    ||||||| ||||||||||| ||||  ||||  ||||| ||| || ||||||| || ||||  ||||||||||||||||| ||||  |||||||||||||     
T  27917174 atatggattgtaacttcagtaaaaggagaactagttctaccttgaaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttga 27917273  T
Q  207 gttcataatacaaaatgacaaagaaata 234  Q
    || |||| |||||||||||  |||||||    
T  27917274 gtccatagtacaaaatgacggagaaata 27917301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 89 - 234
Target Start/End: Original strand, 19757651 - 19757797
Alignment:
Q  89 agtagaagaaagacagagaatatggaatgtaacttcagaaaataagaaaa--agttccaccatggaggtgaaggtgggagggcatatcatatcccaagtg 186  Q
    |||||||| ||||||||| |||||||||||||||| || ||| | | |||  ||| | ||| |||||||||| || ||||  ||||||||| |||||||     
T  19757651 agtagaagcaagacagagtatatggaatgtaactttagcaaa-aggcaaagtagtcctaccttggaggtgaaagttggagatcatatcataccccaagtt 19757749  T
Q  187 acacattttaaatatcttgtgttcataatacaaaatgacaaagaaata 234  Q
    |||   ||||||||||||| || |||| |||||||| ||| |||||||    
T  19757750 acatggtttaaatatcttgggtccatagtacaaaataacagagaaata 19757797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 27917464 - 27917532
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| ||||||||||||||||| |||| || ||||||||||| ||||||||| ||| |||| |||||    
T  27917464 aaccaaaacgagaatcaagtaagcgtagcagagatgaggatgttgtgttggatgagtggtaagcctaga 27917532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 248
Target Start/End: Original strand, 48221448 - 48221527
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaataggaacatgtgtaaa 248  Q
    ||||||||| | ||||| |||||||||||||||||||  |||||| |||||||||||| |||| ||| | ||| ||||||    
T  48221448 catatcataccacaagttacacattttaaatatcttggattcatagtacaaaatgacagagaagtagaagcatatgtaaa 48221527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 52138408 - 52138528
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  52138408 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 52138507  T
Q  185 tgacacattttaaatatcttg 205  Q
    | ||||  |||||||||||||    
T  52138508 ttacacggtttaaatatcttg 52138528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 19736749 - 19736786
Alignment:
Q  89 agtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  19736749 agtagaagcaagacagagtatatggaatgtaacttcag 19736786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 45236755 - 45236816
Alignment:
Q  303 acgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||||| |||||||| |||| || || ||||||||  |||||||||||| ||||||||||    
T  45236755 acgagaataaagtaagcctagccgagattaggatgttgcgttggatgtgtggtaagactaga 45236816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 50249280 - 50249341
Alignment:
Q  303 acgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||||| || ||||||||||||| |||| ||||||  |||||||||||| || |||||||    
T  50249280 acgagaataaaataagcatagcggagatgatgatgtttcgttggatgtgtggtaggactaga 50249341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 360
Target Start/End: Original strand, 26490209 - 26490273
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagac 360  Q
    |||||| | ||||||||||||||  ||||||| |||||||||||  |||||||| ||| ||||||    
T  26490209 aaccaacaagagaatcaagtaagtgtagcggagatgaggatgttgcgttggatgagtggtaagac 26490273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 225
Target Start/End: Original strand, 30743207 - 30743343
Alignment:
Q  90 gtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgac 188  Q
    ||||||||||||||||| ||||||||||||||||||| ||||  |||||  | || ||| |||||||||| || ||||  |||| |||||||||||| ||    
T  30743207 gtagaagaaagacagagtatatggaatgtaacttcagcaaaaggagaaattggtctaccttggaggtgaaagttggagatcataccatatcccaagttac 30743306  T
Q  189 acattttaaatatcttgtgttcataatacaaaatgac 225  Q
    ||  ||||||||||||  ||  ||| |||||||||||    
T  30743307 acggtttaaatatcttaggtcaatagtacaaaatgac 30743343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 2610108 - 2610258
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcagaa-aataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| ||||| ||||||||||||| | ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  2610108 ttgagtagaagcaagacggagtatatgaaatgtaacttcagcagaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 2610207  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||| ||||||||    
T  2610208 ttacacggtttaaatatcttgggtccttcgtacaaaatgacagagaaatag 2610258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 4807172 - 4807292
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  4807172 ttgagtagaagcaagacggagtatatggaatgtaacttcagtggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 4807271  T
Q  185 tgacacattttaaatatcttg 205  Q
    | ||||| |||||||||||||    
T  4807272 ttacacagtttaaatatcttg 4807292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 8180681 - 8180740
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||||||||||  |||| || ||||||||||| ||||||||| ||| ||||||||||    
T  8180681 gagaatcaagtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 8180740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 45077649 - 45077708
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| || |||||||||| || |||||||||||  |||||||||||| ||||||||||    
T  45077649 gagaataaaataagcatagctgagatgaggatgttgcgttggatgtgtggtaagactaga 45077708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 361
Target Start/End: Complemental strand, 19337232 - 19337174
Alignment:
Q  303 acgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagact 361  Q
    |||||||| || ||||| ||| ||| |||||||||||| |||||||||||| |||||||    
T  19337232 acgagaataaaataagcgtagtggagatgaggatgttacgttggatgtgtggtaagact 19337174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 349
Target Start/End: Original strand, 37282002 - 37282052
Alignment:
Q  299 caatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatg 349  Q
    |||||||||||||||||||| ||||  || ||||||||||| |||||||||    
T  37282002 caatacgagaatcaagtaagtatagttgagatgaggatgttgtgttggatg 37282052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 38453258 - 38453172
Alignment:
Q  149 tggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    |||||||||| || ||||  ||||||||| ||||||| ||||  ||||||||||||| || | | ||||||||||||  ||||||||    
T  38453258 tggaggtgaaagttggagatcatatcataccccaagttacacgatttaaatatcttgggtccttcatacaaaatgacggagaaatag 38453172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 1456150 - 1456191
Alignment:
Q  321 tagcggaaatgaggatgttatgttggatgtgtgctaagacta 362  Q
    ||||||| ||||||||||| |||||||||||||||| |||||    
T  1456150 tagcggagatgaggatgttgtgttggatgtgtgctaggacta 1456191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 370
Target Start/End: Complemental strand, 9647962 - 9647921
Alignment:
Q  329 atgaggatgttatgttggatgtgtgctaagactagatgtgat 370  Q
    |||||||||||  |||||||||||| ||||||||||||||||    
T  9647962 atgaggatgttgcgttggatgtgtggtaagactagatgtgat 9647921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 452318 - 452278
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  452318 ttgagtagaagcaagacggagtatatggaatgtaacttcag 452278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 234
Target Start/End: Complemental strand, 7789136 - 7789092
Alignment:
Q  190 cattttaaatatcttgtgttcataatacaaaatgacaaagaaata 234  Q
    ||||||||||||| || |||||||||||||||| ||| |||||||    
T  7789136 cattttaaatatcatgggttcataatacaaaataacagagaaata 7789092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 8180360 - 8180400
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    ||||||||||| ||||||||| ||||||||||||| |||||    
T  8180360 ttgagtagaagcaagacagagtatatggaatgtaatttcag 8180400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 13148923 - 13149043
Alignment:
Q  116 tgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgtgttcataa 214  Q
    ||||||||||| ||||  ||||| ||||  ||| |||||||||| || ||||  ||||||||| ||||||| ||||  |||||||||||   || ||||     
T  13148923 tgtaacttcagcaaaaggagaaatagtttaaccttggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatctcaggtccatag 13149022  T
Q  215 tacaaaatgacaaagaaatag 235  Q
    |||||||||||  ||||||||    
T  13149023 tacaaaatgacggagaaatag 13149043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 23714648 - 23714580
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| |||| ||| || |||||||||| || || || ||||| ||||||||||||| ||||||||||    
T  23714648 aaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactaga 23714580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Complemental strand, 24102320 - 24102252
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| |||| ||| || |||||||||| || || || ||||| ||||||||||||| ||||||||||    
T  24102320 aaccaacacgaaaataaattaagcatagcagagattagaatgttgtgttggatgtgtggtaagactaga 24102252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 87 - 224
Target Start/End: Original strand, 32630188 - 32630326
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagt 185  Q
    |||||||||| ||||| ||| ||||||||||||||||||| ||||  ||||   | || ||| |||||||||| || ||||  ||||||||| |||||||    
T  32630188 tgagtagaagcaagacggagtatatggaatgtaacttcagcaaaaggagaagtgggtctaccttggaggtgaaagttggagatcatatcataccccaagt 32630287  T
Q  186 gacacattttaaatatcttgtgttcataatacaaaatga 224  Q
     ||||  ||||||||||||| || |||| ||||||||||    
T  32630288 tacacggtttaaatatcttgggtccatattacaaaatga 32630326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 38606651 - 38606735
Alignment:
Q  151 gaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    |||||||| || ||||  ||||||||||||||||| ||||  ||||||||||||| || |||| ||||||||||| |||||||||    
T  38606651 gaggtgaaagttggagatcatatcatatcccaagttacacggtttaaatatcttgggtccatagtacaaaatgacgaagaaatag 38606735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 86 - 234
Target Start/End: Complemental strand, 36869991 - 36869842
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcagaaaataagaaaaagt---tccaccatggaggtgaaggtgggagggcatatcatatccca 182  Q
    ||||||||||| |||||| || ||||||||||||||||||| |||  ||  |||||   || ||| |||||||||| || |||| |||||||||| ||||    
T  36869991 ttgagtagaagcaagacatagtatatggaatgtaacttcaggaaa--agggaaagtatgtctaccctggaggtgaaagttggagagcatatcatacccca 36869894  T
Q  183 agtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaata 234  Q
    | | || |  |||||||||||||  | |||| ||||||||||| ||||||||    
T  36869893 aattacgcggtttaaatatcttggatccatagtacaaaatgacgaagaaata 36869842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 37616496 - 37616646
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| ||||||||||||||||||| | ||  ||||  || || ||| |||||||||| |  ||||  ||||||||| ||||||    
T  37616496 ttgagtagaagcaagacggagtatatggaatgtaacttcagcagaaggagaagtaggtctaccttggaggtgaaaggtggagatcatatcataccccaag 37616595  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  37616596 ttacacgatttaaatatcttgggtcctttgtacaaaatgacggagaaatag 37616646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 46356553 - 46356403
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  46356553 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 46356454  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  46356453 ttacacggtttaaatatcttgggtcctttgtacaaaatgacggagaaatag 46356403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 18608308 - 18608252
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgac 225  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||||||    
T  18608308 catatcatatcacaagttacacattttaaatatcttaagttgatagtacaaaatgac 18608252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 18626570 - 18626626
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgac 225  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||||||    
T  18626570 catatcatatcacaagttacacattttaaatatcttaagttgatagtacaaaatgac 18626626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 18637244 - 18637300
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgac 225  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||||||    
T  18637244 catatcatatcacaagttacacattttaaatatcttaagttgatagtacaaaatgac 18637300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 18650679 - 18650735
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgac 225  Q
    ||||||||||| ||||| ||||||||||||||||||  ||| ||| |||||||||||    
T  18650679 catatcatatcacaagttacacattttaaatatcttaagttgatagtacaaaatgac 18650735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 39907081 - 39906961
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  ||||  || || ||| |||||||||| || ||||  |||||||||||||| |    
T  39907081 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggagaagtaggtctaccttggaggtgaaagttggagatcatatcatatcccatg 39906982  T
Q  185 tgacacattttaaatatcttg 205  Q
    | ||||  |||||||||||||    
T  39906981 ttacacggtttaaatatcttg 39906961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 237
Target Start/End: Complemental strand, 43793658 - 43793590
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatagga 237  Q
    ||||||||| | | ||| ||||||||||||||||||| ||  ||| ||||||||||| |||||||||||    
T  43793658 catatcataccactagttacacattttaaatatcttgggtctatagtacaaaatgacgaagaaatagga 43793590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 47848566 - 47848634
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| |||||||| || ||||  ||| ||| ||||||||||| ||||||||||||| ||||||||||    
T  47848566 aaccaacacgagaataaaataagtctaggggagatgaggatgttgtgttggatgtgtggtaagactaga 47848634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 364
Target Start/End: Original strand, 42187380 - 42187431
Alignment:
Q  313 agtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||| ||||||| ||||||||||| ||||||||||||  ||||||||||    
T  42187380 agtaagcgtagcggagatgaggatgttgtgttggatgtgtagtaagactaga 42187431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 49029177 - 49029236
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||||||||||  |||| || |||||||||||| |||||||| ||| ||||||||||    
T  49029177 gagaatcaagtaagtgtagcagagatgaggatgttacgttggatgagtggtaagactaga 49029236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 25579461 - 25579392
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagat 365  Q
    |||||| |||||||| || ||||| ||| ||| |||||||||||  |||||||||||| ||| |||||||    
T  25579461 aaccaacacgagaataaaataagcgtagaggagatgaggatgttgcgttggatgtgtggtaatactagat 25579392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 31004804 - 31004844
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    ||||||||||| ||||||||| ||||||||||| |||||||    
T  31004804 ttgagtagaagcaagacagagtatatggaatgttacttcag 31004844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 49028847 - 49028887
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  49028847 ttgagtagaagcaagacggagtatatggaatgtaacttcag 49028887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 321 - 370
Target Start/End: Original strand, 43732484 - 43732533
Alignment:
Q  321 tagcggaaatgaggatgttatgttggatgtgtgctaagactagatgtgat 370  Q
    |||| ||||||||||||||| |||||||||||| ||||||||||||||||    
T  43732484 tagcagaaatgaggatgttacgttggatgtgtggtaagactagatgtgat 43732533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 224
Target Start/End: Complemental strand, 4033195 - 4033057
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaagt 185  Q
    |||||||||  ||||| ||| ||||||||||||||||||| ||||  || | ||| || ||| ||||| |||| || ||||  ||||||||| |||||||    
T  4033195 tgagtagaaacaagacggagtatatggaatgtaacttcagcaaaaggagtagaaggtctaccttggagatgaaagttggagatcatatcataccccaagt 4033096  T
Q  186 gacacattttaaatatcttgtgttcataatacaaaatga 224  Q
     ||||  ||||| ||||||| ||||||| |||| |||||    
T  4033095 tacacggtttaagtatcttgggttcatagtacacaatga 4033057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 296 - 365
Target Start/End: Complemental strand, 45512886 - 45512817
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactagat 365  Q
    |||||| |||| ||| || ||||||||||||| ||||| |||||  |||||||||||| |||||||||||    
T  45512886 aaccaacacgaaaataaaataagcatagcggagatgagaatgtttcgttggatgtgtggtaagactagat 45512817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 296 - 340
Target Start/End: Original strand, 13986386 - 13986430
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgtta 340  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||    
T  13986386 aaccaacacgagaatcaggtaagcatagcggagatgaggatgtta 13986430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 8880052 - 8879997
Alignment:
Q  169 catatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatga 224  Q
    ||||||||||||||||| ||||  ||||||||||||| | ||||| ||||||||||    
T  8880052 catatcatatcccaagttacacggtttaaatatcttgggctcatagtacaaaatga 8879997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 87 - 126
Target Start/End: Original strand, 13984211 - 13984250
Alignment:
Q  87 tgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  13984211 tgagtagaagcaagacagagtatatggaatgtaacttcag 13984250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 305 - 364
Target Start/End: Original strand, 36545048 - 36545107
Alignment:
Q  305 gagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||||||||||  |||| || ||||||||||| ||||||||| ||| ||||||||||    
T  36545048 gagaatcaagtaagtgtagcagagatgaggatgttgtgttggatgagtggtaagactaga 36545107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 235
Target Start/End: Complemental strand, 12492544 - 12492394
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag-aaaataagaaaaagttccaccatggaggtgaaggtgggagggcatatcatatcccaag 184  Q
    ||||||||||| ||||| ||| |||||||||||||||||||   ||  | ||  || || ||| |||||||||| || ||||  ||||||||| ||||||    
T  12492544 ttgagtagaagcaagacggagtatatggaatgtaacttcagcggaaggataagtaggtctaccttggaggtgaaagttggagatcatatcataccccaag 12492445  T
Q  185 tgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    | ||||  ||||||||||||| || | |  |||||||||||  ||||||||    
T  12492444 ttacacggtttaaatatcttgggtccttcgtacaaaatgacggagaaatag 12492394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 324 - 366
Target Start/End: Original strand, 16252855 - 16252897
Alignment:
Q  324 cggaaatgaggatgttatgttggatgtgtgctaagactagatg 366  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||    
T  16252855 cggaaatgaggatgttgtgttggatgtgtggtaagattagatg 16252897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 123
Target Start/End: Original strand, 36544732 - 36544769
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaactt 123  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  36544732 ttgagtagaagcaagacagagtatatggaatgtaactt 36544769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 39946756 - 39946817
Alignment:
Q  303 acgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    ||||||||||||||||  |||| || |||||||||||  |||||||| ||| ||||||||||    
T  39946756 acgagaatcaagtaagtgtagcagagatgaggatgttgcgttggatgagtggtaagactaga 39946817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 296 - 364
Target Start/End: Original strand, 29735698 - 29735766
Alignment:
Q  296 aaccaatacgagaatcaagtaagcatagcggaaatgaggatgttatgttggatgtgtgctaagactaga 364  Q
    |||||| |||||||| || ||||| ||| ||| ||||||||||| |||||||||  || ||||||||||    
T  29735698 aaccaacacgagaatgaaataagcgtagtggagatgaggatgttgtgttggatgaatggtaagactaga 29735766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 35601680 - 35601728
Alignment:
Q  187 acacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    ||||| |||||||||||||  | ||||||||||||||||| ||||||||    
T  35601680 acacaatttaaatatcttggatccataatacaaaatgacagagaaatag 35601728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 149 - 224
Target Start/End: Original strand, 5836 - 5911
Alignment:
Q  149 tggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatga 224  Q
    |||||||||| || ||||  ||||||||| ||||||| ||||  ||||||||||||| || || ||||||||||||    
T  5836 tggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccacaatacaaaatga 5911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 235
Target Start/End: Complemental strand, 2908 - 2822
Alignment:
Q  149 tggaggtgaaggtgggagggcatatcatatcccaagtgacacattttaaatatcttgtgttcataatacaaaatgacaaagaaatag 235  Q
    |||||||||| || ||||  ||||||||| ||||||| ||||  ||||||||||||| || | |  ||||||||||| |||||||||    
T  2908 tggaggtgaaagttggagatcatatcataccccaagttacacggtttaaatatcttgggtccttcgtacaaaatgacgaagaaatag 2822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 126
Target Start/End: Original strand, 31048 - 31088
Alignment:
Q  86 ttgagtagaagaaagacagagaatatggaatgtaacttcag 126  Q
    ||||||||||| ||||| ||| |||||||||||||||||||    
T  31048 ttgagtagaagcaagactgagtatatggaatgtaacttcag 31088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University