View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_low_10 (Length: 373)
Name: NF19281_low_10
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 3414005 - 3413663
Alignment:
| Q |
16 |
aaagggtctatttaaactaggttttttag-actagtttgagctaaattaaacatatatctcttaatactccttcatggtaaatcaagcattttagaatca |
114 |
Q |
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| T |
3414005 |
aaagggtctatttcaactaggtttttttggactagtttgagctaaattaaacatatatctctcaatactccttcatgttaaatcaagcattttagaatca |
3413906 |
T |
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| Q |
115 |
acatactactttgtataactctctaaaccaaatatttatctagcctctctctaaccttcaccctccattgtacttatctaccctaaaatccaaatatcta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
3413905 |
---tactactttgtataactctctaaaccaaatatttatctagcctctctctaaccttcatcctccattgtacttatctaccctaaaatccaaatatcta |
3413809 |
T |
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| Q |
215 |
gttcaggatataacctcattgggttgtggtgcgactataccgtcttttgcaccactgtgtcaccctattgcggttgcttttattccttccatttagacgg |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
3413808 |
gttcaggatatagcctcattgggttgtggtgcgactataccgtcttttgcaccactgtgtcatcctattgcggttgcttttattccttccatttcgacgg |
3413709 |
T |
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| Q |
315 |
ccgtccattcaaacgctctcttaacctatttccatcaatgttgttc |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3413708 |
tcgtccattcaaacgctctcttaacctatttccatcaatgttgttc |
3413663 |
T |
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