View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_low_11 (Length: 354)
Name: NF19281_low_11
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 28522554 - 28522890
Alignment:
| Q |
1 |
attatacttggaaggattcggattgatcaatctttctaacttaaaagcattcatcatttgttatgtttaattcgaagtaatattatggttcaggccaaac |
100 |
Q |
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| T |
28522554 |
attatacttggaaggattcggattgatcaatctttctaacttaaaagcattcatcatttgttatgtttaattcgaagtaatattgtggttcaggccaaac |
28522653 |
T |
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| Q |
101 |
tttttcatttaatggtgtgatctagttggagtgtgtgatacattagttttcacggatcttattgtgtgaaaatatattgtgttccttcacatgataaggt |
200 |
Q |
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| T |
28522654 |
tttttgatttaatggtgtgatctagttggagtgtgtgatacattagttttcacggatcttattgtgtgaaaatatat--tgttccttcacatgataaggt |
28522751 |
T |
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| Q |
201 |
tgcctgtatttacattttctcgtactccattataatccaagtatataagatgcctctcttttttccttnnnnnnntaaaagtataattgatgttttttaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
28522752 |
tgcctgtatttacattttctcgtactccattataatccaagtatataagatgcctctcttttttccttaaaaaaataaaattataattgatgttttttaa |
28522851 |
T |
|
| Q |
301 |
caaatttggttggaatcatatgatatacaatattacaat |
339 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
28522852 |
caaatttggttggaatcatatgatatacaatattacaat |
28522890 |
T |
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