View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_low_15 (Length: 290)
Name: NF19281_low_15
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 277
Target Start/End: Complemental strand, 54879111 - 54878836
Alignment:
| Q |
10 |
aaaatattgtataagatatgcaagttgtcggcatatcaaaatggtagagactagaagataagaaaagaacattgcacttttcatc----------taaat |
99 |
Q |
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| T |
54879111 |
aaaatattgtataagatatgcaagttgtcggcatatcaaaatggtagagactagaagataagaaaagaacattgcacttttcatcattgtgtatttaaat |
54879012 |
T |
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| Q |
100 |
cttattatagttccaatatatattcttcctcacatggattgcataccgttttnnnnnnnnnnnnnggagggtcttaccaaaattaattttaaaagcatgt |
199 |
Q |
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| T |
54879011 |
cttattatagttccaatatatattcttcctcacatggattgcatactgtttttatatatatat--ggagggtcttaccaaaattaattttaaaagcatgt |
54878914 |
T |
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| Q |
200 |
gaggctgggattgaggactcaaattttgtgtatcatctcaatatattattattgagatccatcattattgatgatttt |
277 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878913 |
gaggctgggattgaggactcaaattttgtgtatcatctcaatatattattattgagatccatcattattgatgatttt |
54878836 |
T |
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