View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19281_low_2 (Length: 536)

Name: NF19281_low_2
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19281_low_2
NF19281_low_2
[»] chr4 (6 HSPs)
chr4 (9-519)||(7457901-7458411)
chr4 (9-519)||(7411822-7412333)
chr4 (420-500)||(44919976-44920056)
chr4 (13-80)||(13031387-13031454)
chr4 (13-84)||(7419368-7419439)
chr4 (301-337)||(44920148-44920184)
[»] scaffold0105 (5 HSPs)
scaffold0105 (13-519)||(3433-3939)
scaffold0105 (13-519)||(48753-49259)
scaffold0105 (13-519)||(9515-10021)
scaffold0105 (13-519)||(35153-35659)
scaffold0105 (13-332)||(15580-15899)
[»] scaffold0345 (1 HSPs)
scaffold0345 (13-519)||(3320-3826)
[»] scaffold1330 (1 HSPs)
scaffold1330 (74-519)||(1552-1997)
[»] scaffold0496 (1 HSPs)
scaffold0496 (146-519)||(2750-3123)
[»] chr5 (1 HSPs)
chr5 (478-515)||(17356638-17356675)


Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 9 - 519
Target Start/End: Complemental strand, 7458411 - 7457901
Alignment:
Q  9 acatcatcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaa 108  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7458411 acatcatcaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttgggacccaa 7458312  T
Q  109 gcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattg 208  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7458311 gcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacctttcattg 7458212  T
Q  209 aagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttgcgtaatcagcattatacaatac 308  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  7458211 aggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatacttctttacttcctttgttgcgtaatcagcattatacaatac 7458112  T
Q  309 attttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattct 408  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7458111 attttttacaactgcaatcaagggaggtggtccataagatggtggtgcctccaatactccagttggcattgggaacatgttgggtatttcacgccattct 7458012  T
Q  409 tttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccg 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7458011 tttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaatttttcatccataaatacacccg 7457912  T
Q  509 aacacattttt 519  Q
    |||||||||||    
T  7457911 aacacattttt 7457901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 519
Target Start/End: Complemental strand, 7412333 - 7411822
Alignment:
Q  9 acatcatcaa-catcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggaccca 107  Q
    |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  7412333 acatcatcaaacatcccatcacagtgcaactatacacaaagctccctattttctttcttgcaagttgattccattgtatcgctctttcatttgggaccca 7412234  T
Q  108 agcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcatt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  7412233 agcattgatttccaacatgcctctacaatgaagaatgggacctccaagaaaaattagcatatctccacatgcacgaaaagctaatccccaacctttcatt 7412134  T
Q  208 gaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttgcgtaatcagcattatacaata 307  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  7412133 gaggtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttatcatacttctttacttcctttgttgcgtaatcagcattatacaata 7412034  T
Q  308 cattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattc 407  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  7412033 cattttttacaactgcaatcaagggaggtggtccataagatggtggtgcctccaatactccagttggcattgggaacatgttgggtatttcacgccattc 7411934  T
Q  408 ttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacaccc 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7411933 ttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaatttttcatccataaatacaccc 7411834  T
Q  508 gaacacattttt 519  Q
     |||||||||||    
T  7411833 caacacattttt 7411822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 420 - 500
Target Start/End: Complemental strand, 44920056 - 44919976
Alignment:
Q  420 atcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaa 500  Q
    |||||| || |||||||| || ||| |||||||||| ||| |||||| ||| |||||||||||||||||| ||||||||||    
T  44920056 atcaaactcttcaccacaagttagttgtgttgttttgtcaactccaactccgccaaggacataaaatttttcatccataaa 44919976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 13031454 - 13031387
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattcca 80  Q
    |||||||||||||||||| ||||  ||| |||||||||||||  || |||||||||||||||||||||    
T  13031454 catcaacatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagttgattcca 13031387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 7419368 - 7419439
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgt 84  Q
    |||||| ||||||||||| ||||  ||| |||||||||||||  || |||||||||||| ||||||||||||    
T  7419368 catcaatatcccatcacagtgcagttatgcacaaagctccctgattgctttctcgcaagctgattccattgt 7419439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 44920184 - 44920148
Alignment:
Q  301 tacaatacattttttacaactgcaatcaaaggaggtg 337  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  44920184 tacaatacatcttttacaactgcaattaaaggaggtg 44920148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 519
Target Start/End: Original strand, 3433 - 3939
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 112  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  3433 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 3532  T
Q  113 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 212  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  3533 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 3632  T
Q  213 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat 310  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||||||  |||||||  | ||||| |||  |||||||||||    
T  3633 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat 3730  T
Q  311 tttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattcttt 410  Q
    |||||||||||||||||||||||||||  ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||||||||||| |||    
T  3731 tttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttcacgccatttttt 3830  T
Q  411 tctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccgaa 510  Q
    | |||| |||||||| ||||| |||||||||||  ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |||||||  |||    
T  3831 tgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatgaatacacttgaa 3930  T
Q  511 cacattttt 519  Q
    |||||||||    
T  3931 cacattttt 3939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 49259 - 48753
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 112  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  49259 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 49160  T
Q  113 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 212  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  49159 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 49060  T
Q  213 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat 310  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||||||  |||||||  | ||||| |||  |||||||||||    
T  49059 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat 48962  T
Q  311 tttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattcttt 410  Q
    |||||||||||||||||||||||||||  ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||||||||||| |||    
T  48961 tttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttcacgccatttttt 48862  T
Q  411 tctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccgaa 510  Q
    | |||| |||||||| ||||| |||||||||||  ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |||||||  |||    
T  48861 tgtcttcatatcaaactcctccccacatgtaagctgtgtttttttttcagctgctatcccaccaaggacataaaattttccatccatgaatacacttgaa 48762  T
Q  511 cacattttt 519  Q
    |||||||||    
T  48761 cacattttt 48753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 13 - 519
Target Start/End: Original strand, 9515 - 10021
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 112  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  9515 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 9614  T
Q  113 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 212  Q
    ||||||||| |||   |  || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  9615 tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 9714  T
Q  213 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat 310  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||||||  |||||||  | ||||| |||  |||||||||||    
T  9715 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat 9812  T
Q  311 tttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattcttt 410  Q
    |||||||||||||||||||||||||||  ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||||||||||| |||    
T  9813 tttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttcacgccatttttt 9912  T
Q  411 tctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccgaa 510  Q
    | |||| |||||||| ||||| |||||||||||  ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |||||||  |||    
T  9913 tgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatgaatacacttgaa 10012  T
Q  511 cacattttt 519  Q
    |||||||||    
T  10013 cacattttt 10021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 13 - 519
Target Start/End: Complemental strand, 35659 - 35153
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 112  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  35659 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 35560  T
Q  113 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 212  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  35559 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 35460  T
Q  213 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat 310  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||||||  |||||||  | ||||| |||  |||||||||||    
T  35459 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat 35362  T
Q  311 tttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattcttt 410  Q
    |||||||||||||||||||||||||||  ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||||| ||||| |||    
T  35361 tttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttcacaccatttttt 35262  T
Q  411 tctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccgaa 510  Q
    | |||| |||||||| ||||| |||||||||||  ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |||||||  |||    
T  35261 tgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatgaatacacttgaa 35162  T
Q  511 cacattttt 519  Q
    |||||||||    
T  35161 cacattttt 35153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 15580 - 15899
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 112  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  15580 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 15679  T
Q  113 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 212  Q
    ||||||||| |||   || || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  15680 tgatttccatcattattccaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 15779  T
Q  213 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat 310  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||||||  |||||||  | ||||| |||  || ||||||||    
T  15780 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatccaatacat 15877  T
Q  311 tttttacaactgcaatcaaagg 332  Q
    |||||||||| |||||||||||    
T  15878 tttttacaaccgcaatcaaagg 15899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 175; Significance: 6e-94; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 13 - 519
Target Start/End: Original strand, 3320 - 3826
Alignment:
Q  13 catcaacatcccatcacaatgcaactatacacaaagctccctattttctttctcgcaagttgattccattgtatcgctctttcatttgggacccaagcat 112  Q
    |||||||||||||||||| | ||| ||| |||||| | ||||  ||  ||||  |||||  |||||||||||  | ||| ||||||||||| ||||||||    
T  3320 catcaacatcccatcacagtacaattatgcacaaaaccccctgattgatttcctgcaagccgattccattgtggctctccttcatttgggatccaagcat 3419  T
Q  113 tgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagt 212  Q
    ||||||||| |||   |  || ||||| ||  |||||||| ||||| | |||   |||||| ||||| |||||||||||||||||||| ||||| |||||    
T  3420 tgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctccgcatgctcgaaaggctaatccccaaccattcatcgaagt 3519  T
Q  213 ggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatacttttttacttcctttgttg--cgtaatcagcattatacaatacat 310  Q
     |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||||||  |||||||  | ||||| |||  |||||||||||    
T  3520 agcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttctttactt--tttgttgtccataatctgcagcatacaatacat 3617  T
Q  311 tttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattcttt 410  Q
    |||||||||||||||||||||||||||  ||| |||| ||||||| ||| || ||||||||| | || ||||||||||| |||||||||||||||| |||    
T  3618 tttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagttcgtacggggaacatgttaggtatttcacgccatttttt 3717  T
Q  411 tctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccgaa 510  Q
    | |||| |||||||| ||||| |||||||||||  ||||| |||| |||||| | || ||||||||||||||||||||||||||||| |||||||  |||    
T  3718 tgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatcccaccaaggacataaaattttccatccatgaatacacttgaa 3817  T
Q  511 cacattttt 519  Q
    |||||||||    
T  3818 cacattttt 3826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1330 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 74 - 519
Target Start/End: Complemental strand, 1997 - 1552
Alignment:
Q  74 gattccattgtatcgctctttcatttgggacccaagcattgatttccaacatgcctctacaatgaagaatgggacctcccagaaaaattagcatatctcc 173  Q
    |||||||||||  | ||| ||||||||||| ||||||||||||||||| |||   |  || ||||| ||  |||||||| ||||| | |||   ||||||    
T  1997 gattccattgtggctctccttcatttgggatccaagcattgatttccatcattattgcaccatgaataacaggacctccaagaaataatagatgatctcc 1898  T
Q  174 acatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaacccaagagttattgtttttattatactttttt 273  Q
     ||||| |||||||||||||||||||| ||||| ||||| |||||||| ||||| ||||||||| | ||||||||||| |||| ||||| |||||| |||    
T  1897 gcatgctcgaaaggctaatccccaaccattcatcgaagtagcttgctcgggaaagcttccaatgatgacccaagagttgttgtctttatcatacttcttt 1798  T
Q  274 acttcctttgttg--cgtaatcagcattatacaatacattttttacaactgcaatcaaaggaggtggtccataagatggtggtgcctccaatactccagt 371  Q
    ||||  |||||||  | ||||| |||  ||||||||||||||||||||||||||||||||||||||  ||| |||| ||||||| ||| || ||||||||    
T  1797 actt--tttgttgtccataatctgcagcatacaatacattttttacaactgcaatcaaaggaggtgacccaaaagaaggtggtgtctcaaacactccagt 1700  T
Q  372 tggcactgggaacatgttgggtatttcacgccattcttttctctttatatcaaattcctcaccacatgtaagtggtgttgttttatcagctccaattcca 471  Q
    | | || ||||||||||| |||||||||||||||| |||| |||| |||||||| ||||| |||||||||||  ||||| |||| |||||| | || |||    
T  1699 tcgtacggggaacatgttaggtatttcacgccatttttttgtcttcatatcaaactcctccccacatgtaagctgtgtttttttgtcagctgctatccca 1600  T
Q  472 ccaaggacataaaattttccatccataaatacacccgaacacattttt 519  Q
    |||||||||||||||||||||||||| |||||||  ||||||||||||    
T  1599 ccaaggacataaaattttccatccatgaatacacttgaacacattttt 1552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 146 - 519
Target Start/End: Complemental strand, 3123 - 2750
Alignment:
Q  146 gacctcccagaaaaattagcatatctccacatgcacgaaaggctaatccccaacctttcattgaagtggcttgctcaggaaatcttccaatggtaaccca 245  Q
    ||||||| ||||| | |||  ||||||||||||  ||||| |||| ||||||||| ||||  || || |||||||||||||| ||||||||| | |||||    
T  3123 gacctccaagaaataatagtttatctccacatgatcgaaatgctagtccccaaccattcaccgatgtagcttgctcaggaaagcttccaatgatgaccca 3024  T
Q  246 agagttattgtttttattatacttttttacttcctttgttgcgtaatcagcattatacaatacattttttacaactgcaatcaaaggaggtggtccataa 345  Q
    | |||| |||| ||||| |||||| |||||||| | | || | ||||| |||  |||||||||||||||||||||||||||||| |||||||  ||| ||    
T  3023 atagttgttgtctttatcatacttctttacttcttgttttccataatctgcagcatacaatacattttttacaactgcaatcaagggaggtgacccaaaa 2924  T
Q  346 gatggtggtgcctccaatactccagttggcactgggaacatgttgggtatttcacgccattcttttctctttatatcaaattcctcaccacatgtaagtg 445  Q
    || ||||||| |||  | ||||||||| | ||||||| ||||||||||||||||||||||| |||  ||||||||||||| ||||||||||||||||||     
T  2923 gaaggtggtgtctcagacactccagttcgtactgggagcatgttgggtatttcacgccattttttattctttatatcaaactcctcaccacatgtaagtt 2824  T
Q  446 gtgttgttttatcagctccaattccaccaaggacataaaattttccatccataaatacacccgaacacattttt 519  Q
    ||||| |||| |||||| | || ||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  2823 gtgtttttttgtcagctgctatcccaccaaggacgtaaaattttccatccataaatacacttgaacacattttt 2750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 515
Target Start/End: Complemental strand, 17356675 - 17356638
Alignment:
Q  478 acataaaattttccatccataaatacacccgaacacat 515  Q
    |||||||||||||||||||| |||||||| ||||||||    
T  17356675 acataaaattttccatccatgaatacaccagaacacat 17356638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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