View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19281_low_23 (Length: 227)
Name: NF19281_low_23
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_low_23 |
 | |
|
| [»] scaffold1861 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1861 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: scaffold1861
Description:
Target: scaffold1861; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 148 - 35
Alignment:
| Q |
1 |
tttcaacacactccaatgattattagacacatcatccacttattttaattccttgactggcaacctgtactaaaagttgctaaatcacattttttgttaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
148 |
tttcaacacactccaatgattattagatacatcatccacttattttaattccttgagtggcaaccgatactaaaagttgctaaatcacattttttgttaa |
49 |
T |
|
| Q |
101 |
ttttacttgaactc |
114 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
48 |
ttttacttgaactc |
35 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 49977725 - 49977594
Alignment:
| Q |
5 |
aacacactccaatgattattagacacatcatccacttattttaattccttgactggcaacctgtactaaaagttgctaaatcacattttttgttaatttt |
104 |
Q |
| |
|
||||||||| ||||| ||||| ||||||| |||||||||||||||||||||| || ||| ||| || |||||| ||||| || ||| || ||||| |
|
|
| T |
49977725 |
aacacactcaaatgacaattagccacatcacccacttattttaattccttgacaggttaccggtaatacaagttgttaaat---gttatttttttatttt |
49977629 |
T |
|
| Q |
105 |
acttgaactcatcctcctcgttgaactccaagctc |
139 |
Q |
| |
|
||| |||| |||||| ||||||||||| ||||||| |
|
|
| T |
49977628 |
actcgaacacatccttctcgttgaacttcaagctc |
49977594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 37085339 - 37085406
Alignment:
| Q |
28 |
cacatcatccacttattttaattccttgactggcaacctgtactaaaagttgctaaatcacatttttt |
95 |
Q |
| |
|
||||||| || |||||||||||||||||||||| |||| |||||| | |||||||||| ||||||||| |
|
|
| T |
37085339 |
cacatcacccgcttattttaattccttgactggtaaccggtactagaggttgctaaatgacatttttt |
37085406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 39217636 - 39217688
Alignment:
| Q |
5 |
aacacactccaatgattattagacacatcatccacttattttaattccttgac |
57 |
Q |
| |
|
|||||| || |||||| ||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
39217636 |
aacacattcaaatgataattagccacatcacccacttattttaattccttgac |
39217688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University