View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19281_low_25 (Length: 218)
Name: NF19281_low_25
Description: NF19281
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19281_low_25 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 36734270 - 36734053
Alignment:
| Q |
1 |
ctaatttcctttaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgt |
100 |
Q |
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| T |
36734270 |
ctaatttcctctaaccctttgctaaacccctggacatcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgt |
36734171 |
T |
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| Q |
101 |
cttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatcctcgaaataacgttattcgacaacttcaaaag |
200 |
Q |
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| T |
36734170 |
cttgcaccaacttcctcacctcttcagcttcaccatcattttcactacaagtttggctcataatcatccttgaaataacgttattcgacaacttcaaaag |
36734071 |
T |
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| Q |
201 |
ctctcttccaacatcaat |
218 |
Q |
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| T |
36734070 |
ctctcttccaacatcaat |
36734053 |
T |
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Back To:
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Target: scaffold0171 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 116
Target Start/End: Complemental strand, 19053 - 18973
Alignment:
| Q |
36 |
atcccagttcttaaaaaaccaaataaaatcagaaatattaaacttccccgtaagatgtacagtgtcttgcaccaacttcct |
116 |
Q |
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|||||| ||||||||||||||||||||||| || | ||||||| |||| | ||| | |||| | |||||||||| |||||| |
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| T |
19053 |
atcccaattcttaaaaaaccaaataaaatccgacaaattaaacctccctgaaagctctacactatcttgcaccatcttcct |
18973 |
T |
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